Coexpression cluster: Cluster_106 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009534 chloroplast thylakoid 41.41% (41/99) 5.76 0.0 0.0
GO:0009536 plastid 79.8% (79/99) 2.53 0.0 0.0
GO:0009535 chloroplast thylakoid membrane 48.48% (48/99) 5.41 0.0 0.0
GO:0009579 thylakoid 47.47% (47/99) 5.33 0.0 0.0
GO:0034357 photosynthetic membrane 49.49% (49/99) 5.38 0.0 0.0
GO:0009507 chloroplast 79.8% (79/99) 2.56 0.0 0.0
GO:0042651 thylakoid membrane 49.49% (49/99) 5.38 0.0 0.0
GO:0031976 plastid thylakoid 41.41% (41/99) 5.76 0.0 0.0
GO:0055035 plastid thylakoid membrane 48.48% (48/99) 5.4 0.0 0.0
GO:0044436 thylakoid part 52.53% (52/99) 5.25 0.0 0.0
GO:0044435 plastid part 68.69% (68/99) 3.93 0.0 0.0
GO:0044434 chloroplast part 67.68% (67/99) 3.95 0.0 0.0
GO:0031984 organelle subcompartment 41.41% (41/99) 4.65 0.0 0.0
GO:0015979 photosynthesis 32.32% (32/99) 5.56 0.0 0.0
GO:0044446 intracellular organelle part 71.72% (71/99) 2.68 0.0 0.0
GO:0044422 organelle part 71.72% (71/99) 2.67 0.0 0.0
GO:0019344 cysteine biosynthetic process 28.28% (28/99) 5.25 0.0 0.0
GO:0006534 cysteine metabolic process 28.28% (28/99) 5.24 0.0 0.0
GO:0009070 serine family amino acid biosynthetic process 28.28% (28/99) 5.23 0.0 0.0
GO:0019684 photosynthesis, light reaction 25.25% (25/99) 5.56 0.0 0.0
GO:0009069 serine family amino acid metabolic process 28.28% (28/99) 4.94 0.0 0.0
GO:0000097 sulfur amino acid biosynthetic process 28.28% (28/99) 4.71 0.0 0.0
GO:0000096 sulfur amino acid metabolic process 28.28% (28/99) 4.55 0.0 0.0
GO:0044272 sulfur compound biosynthetic process 31.31% (31/99) 4.19 0.0 0.0
GO:1901607 alpha-amino acid biosynthetic process 29.29% (29/99) 4.41 0.0 0.0
GO:0006364 rRNA processing 25.25% (25/99) 4.91 0.0 0.0
GO:0016072 rRNA metabolic process 25.25% (25/99) 4.88 0.0 0.0
GO:0010287 plastoglobule 18.18% (18/99) 6.21 0.0 0.0
GO:0016168 chlorophyll binding 15.15% (15/99) 7.03 0.0 0.0
GO:0009941 chloroplast envelope 31.31% (31/99) 4.01 0.0 0.0
GO:0009526 plastid envelope 31.31% (31/99) 4.0 0.0 0.0
GO:0030076 light-harvesting complex 14.14% (14/99) 7.29 0.0 0.0
GO:0034470 ncRNA processing 25.25% (25/99) 4.7 0.0 0.0
GO:0008652 cellular amino acid biosynthetic process 29.29% (29/99) 4.16 0.0 0.0
GO:0046906 tetrapyrrole binding 16.16% (16/99) 6.57 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 29.29% (29/99) 4.08 0.0 0.0
GO:0031967 organelle envelope 31.31% (31/99) 3.85 0.0 0.0
GO:0031975 envelope 31.31% (31/99) 3.85 0.0 0.0
GO:1901605 alpha-amino acid metabolic process 29.29% (29/99) 3.94 0.0 0.0
GO:0034660 ncRNA metabolic process 25.25% (25/99) 4.33 0.0 0.0
GO:0006790 sulfur compound metabolic process 31.31% (31/99) 3.62 0.0 0.0
GO:0009521 photosystem 13.13% (13/99) 6.97 0.0 0.0
GO:0035304 regulation of protein dephosphorylation 19.19% (19/99) 5.25 0.0 0.0
GO:0035303 regulation of dephosphorylation 19.19% (19/99) 5.24 0.0 0.0
GO:0044444 cytoplasmic part 84.85% (84/99) 1.29 0.0 0.0
GO:0010207 photosystem II assembly 20.2% (20/99) 4.99 0.0 0.0
GO:0009657 plastid organization 23.23% (23/99) 4.41 0.0 0.0
GO:0032991 protein-containing complex 39.39% (39/99) 2.86 0.0 0.0
GO:0006520 cellular amino acid metabolic process 29.29% (29/99) 3.6 0.0 0.0
GO:0098796 membrane protein complex 24.24% (24/99) 4.16 0.0 0.0
GO:0051174 regulation of phosphorus metabolic process 19.19% (19/99) 4.76 0.0 0.0
GO:0019220 regulation of phosphate metabolic process 19.19% (19/99) 4.76 0.0 0.0
GO:0031399 regulation of protein modification process 19.19% (19/99) 4.72 0.0 0.0
GO:0044237 cellular metabolic process 70.71% (70/99) 1.47 0.0 0.0
GO:0048037 cofactor binding 15.15% (15/99) 5.33 0.0 0.0
GO:0044283 small molecule biosynthetic process 34.34% (34/99) 2.79 0.0 0.0
GO:0098807 chloroplast thylakoid membrane protein complex 11.11% (11/99) 6.63 0.0 0.0
GO:0008152 metabolic process 72.73% (72/99) 1.34 0.0 0.0
GO:0032268 regulation of cellular protein metabolic process 19.19% (19/99) 4.29 0.0 0.0
GO:0051246 regulation of protein metabolic process 19.19% (19/99) 4.25 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 35.35% (35/99) 2.64 0.0 0.0
GO:0046394 carboxylic acid biosynthetic process 31.31% (31/99) 2.89 0.0 0.0
GO:0016053 organic acid biosynthetic process 31.31% (31/99) 2.89 0.0 0.0
GO:0016020 membrane 56.57% (56/99) 1.74 0.0 0.0
GO:0009538 photosystem I reaction center 8.08% (8/99) 7.67 0.0 0.0
GO:0009987 cellular process 76.77% (76/99) 1.13 0.0 0.0
GO:0043436 oxoacid metabolic process 36.36% (36/99) 2.38 0.0 0.0
GO:0006082 organic acid metabolic process 36.36% (36/99) 2.38 0.0 0.0
GO:0006396 RNA processing 25.25% (25/99) 3.16 0.0 0.0
GO:0009523 photosystem II 9.09% (9/99) 6.77 0.0 0.0
GO:0044281 small molecule metabolic process 41.41% (41/99) 2.08 0.0 0.0
GO:0034622 cellular protein-containing complex assembly 20.2% (20/99) 3.62 0.0 0.0
GO:0065003 protein-containing complex assembly 20.2% (20/99) 3.56 0.0 0.0
GO:0019725 cellular homeostasis 15.15% (15/99) 4.42 0.0 0.0
GO:0043933 protein-containing complex subunit organization 20.2% (20/99) 3.52 0.0 0.0
GO:0044425 membrane part 25.25% (25/99) 2.95 0.0 0.0
GO:0030003 cellular cation homeostasis 14.14% (14/99) 4.56 0.0 0.0
GO:0070838 divalent metal ion transport 15.15% (15/99) 4.32 0.0 0.0
GO:0055080 cation homeostasis 15.15% (15/99) 4.32 0.0 0.0
GO:0072511 divalent inorganic cation transport 15.15% (15/99) 4.3 0.0 0.0
GO:0030095 chloroplast photosystem II 8.08% (8/99) 6.88 0.0 0.0
GO:0006873 cellular ion homeostasis 14.14% (14/99) 4.48 0.0 0.0
GO:0019752 carboxylic acid metabolic process 33.33% (33/99) 2.33 0.0 0.0
GO:0010114 response to red light 12.12% (12/99) 5.01 0.0 0.0
GO:0055082 cellular chemical homeostasis 14.14% (14/99) 4.45 0.0 0.0
GO:0050801 ion homeostasis 15.15% (15/99) 4.16 0.0 0.0
GO:1901576 organic substance biosynthetic process 46.46% (46/99) 1.69 0.0 0.0
GO:0009637 response to blue light 12.12% (12/99) 4.71 0.0 0.0
GO:0009416 response to light stimulus 26.26% (26/99) 2.64 0.0 0.0
GO:0048878 chemical homeostasis 15.15% (15/99) 3.94 0.0 0.0
GO:0009058 biosynthetic process 46.46% (46/99) 1.65 0.0 0.0
GO:0010218 response to far red light 11.11% (11/99) 4.96 0.0 0.0
GO:0022607 cellular component assembly 21.21% (21/99) 3.02 0.0 0.0
GO:0042592 homeostatic process 16.16% (16/99) 3.66 0.0 0.0
GO:0009314 response to radiation 26.26% (26/99) 2.55 0.0 0.0
GO:0010155 regulation of proton transport 10.1% (10/99) 5.18 0.0 0.0
GO:1904062 regulation of cation transmembrane transport 10.1% (10/99) 5.14 0.0 0.0
GO:0044249 cellular biosynthetic process 42.42% (42/99) 1.69 0.0 0.0
GO:0006807 nitrogen compound metabolic process 51.52% (51/99) 1.41 0.0 0.0
GO:0071704 organic substance metabolic process 60.61% (60/99) 1.19 0.0 0.0
GO:0016070 RNA metabolic process 26.26% (26/99) 2.39 0.0 0.0
GO:0031978 plastid thylakoid lumen 9.09% (9/99) 5.15 0.0 0.0
GO:0009543 chloroplast thylakoid lumen 9.09% (9/99) 5.15 0.0 0.0
GO:0065007 biological regulation 50.51% (50/99) 1.36 0.0 0.0
GO:0034762 regulation of transmembrane transport 10.1% (10/99) 4.57 0.0 0.0
GO:0034765 regulation of ion transmembrane transport 10.1% (10/99) 4.57 0.0 0.0
GO:0006996 organelle organization 24.24% (24/99) 2.39 0.0 0.0
GO:0031977 thylakoid lumen 9.09% (9/99) 4.84 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 89.9% (89/99) 0.58 0.0 0.0
GO:0043227 membrane-bounded organelle 89.9% (89/99) 0.58 0.0 0.0
GO:0043229 intracellular organelle 89.9% (89/99) 0.57 0.0 0.0
GO:0043226 organelle 89.9% (89/99) 0.57 0.0 0.0
GO:0044238 primary metabolic process 53.54% (53/99) 1.19 0.0 0.0
GO:0046483 heterocycle metabolic process 35.35% (35/99) 1.69 0.0 0.0
GO:0043269 regulation of ion transport 10.1% (10/99) 4.22 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 41.41% (41/99) 1.46 0.0 0.0
GO:0010109 regulation of photosynthesis 6.06% (6/99) 6.01 0.0 0.0
GO:0009642 response to light intensity 12.12% (12/99) 3.57 0.0 0.0
GO:0009644 response to high light intensity 11.11% (11/99) 3.78 0.0 0.0
GO:0009773 photosynthetic electron transport in photosystem I 7.07% (7/99) 5.29 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 35.35% (35/99) 1.61 0.0 0.0
GO:0015994 chlorophyll metabolic process 10.1% (10/99) 4.03 0.0 0.0
GO:0030001 metal ion transport 15.15% (15/99) 2.98 0.0 0.0
GO:0051049 regulation of transport 10.1% (10/99) 4.0 0.0 0.0
GO:0042440 pigment metabolic process 12.12% (12/99) 3.47 0.0 0.0
GO:0046148 pigment biosynthetic process 11.11% (11/99) 3.67 0.0 0.0
GO:0009639 response to red or far red light 13.13% (13/99) 3.23 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 35.35% (35/99) 1.55 0.0 0.0
GO:0042548 regulation of photosynthesis, light reaction 5.05% (5/99) 6.45 0.0 0.0
GO:0009522 photosystem I 4.04% (4/99) 7.54 0.0 0.0
GO:0019682 glyceraldehyde-3-phosphate metabolic process 12.12% (12/99) 3.35 0.0 0.0
GO:0006778 porphyrin-containing compound metabolic process 10.1% (10/99) 3.8 0.0 0.0
GO:0033013 tetrapyrrole metabolic process 10.1% (10/99) 3.79 0.0 0.0
GO:0009767 photosynthetic electron transport chain 7.07% (7/99) 4.91 0.0 0.0
GO:0043467 regulation of generation of precursor metabolites and energy 5.05% (5/99) 6.28 0.0 0.0
GO:0031323 regulation of cellular metabolic process 29.29% (29/99) 1.73 0.0 0.0
GO:0051186 cofactor metabolic process 18.18% (18/99) 2.44 0.0 0.0
GO:0032879 regulation of localization 10.1% (10/99) 3.71 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 35.35% (35/99) 1.49 0.0 0.0
GO:0090304 nucleic acid metabolic process 26.26% (26/99) 1.86 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 30.3% (30/99) 1.67 0.0 0.0
GO:0015995 chlorophyll biosynthetic process 8.08% (8/99) 4.34 0.0 0.0
GO:0019222 regulation of metabolic process 30.3% (30/99) 1.62 0.0 0.0
GO:0006812 cation transport 15.15% (15/99) 2.63 0.0 0.0
GO:0006779 porphyrin-containing compound biosynthetic process 8.08% (8/99) 4.05 0.0 0.0
GO:0022900 electron transport chain 7.07% (7/99) 4.43 0.0 0.0
GO:0033014 tetrapyrrole biosynthetic process 8.08% (8/99) 4.01 0.0 0.0
GO:0006081 cellular aldehyde metabolic process 12.12% (12/99) 2.98 0.0 0.0
GO:0050789 regulation of biological process 39.39% (39/99) 1.22 0.0 1e-06
GO:0006811 ion transport 17.17% (17/99) 2.24 0.0 1e-06
GO:0009654 photosystem II oxygen evolving complex 4.04% (4/99) 6.43 0.0 1e-06
GO:0043168 anion binding 15.15% (15/99) 2.43 0.0 1e-06
GO:0009743 response to carbohydrate 10.1% (10/99) 3.23 0.0 1e-06
GO:0009765 photosynthesis, light harvesting 4.04% (4/99) 6.32 0.0 1e-06
GO:0009658 chloroplast organization 9.09% (9/99) 3.43 0.0 1e-06
GO:0080090 regulation of primary metabolic process 26.26% (26/99) 1.59 0.0 1e-06
GO:0051171 regulation of nitrogen compound metabolic process 25.25% (25/99) 1.62 0.0 2e-06
GO:0006739 NADP metabolic process 8.08% (8/99) 3.59 0.0 2e-06
GO:0009768 photosynthesis, light harvesting in photosystem I 3.03% (3/99) 7.39 0.0 2e-06
GO:0042549 photosystem II stabilization 3.03% (3/99) 7.39 0.0 2e-06
GO:0044424 intracellular part 90.91% (90/99) 0.37 1e-06 3e-06
GO:0009744 response to sucrose 8.08% (8/99) 3.43 1e-06 4e-06
GO:0034285 response to disaccharide 8.08% (8/99) 3.41 1e-06 5e-06
GO:0009628 response to abiotic stimulus 27.27% (27/99) 1.45 1e-06 5e-06
GO:0009532 plastid stroma 12.12% (12/99) 2.51 1e-06 7e-06
GO:0009570 chloroplast stroma 12.12% (12/99) 2.51 1e-06 7e-06
GO:0060255 regulation of macromolecule metabolic process 24.24% (24/99) 1.48 3e-06 1.5e-05
GO:0019637 organophosphate metabolic process 16.16% (16/99) 1.97 3e-06 1.5e-05
GO:0006098 pentose-phosphate shunt 7.07% (7/99) 3.47 3e-06 1.7e-05
GO:0016043 cellular component organization 26.26% (26/99) 1.38 4e-06 1.8e-05
GO:0010205 photoinhibition 3.03% (3/99) 6.54 4e-06 1.8e-05
GO:0043155 negative regulation of photosynthesis, light reaction 3.03% (3/99) 6.54 4e-06 1.8e-05
GO:0043085 positive regulation of catalytic activity 6.06% (6/99) 3.85 4e-06 1.9e-05
GO:0051156 glucose 6-phosphate metabolic process 7.07% (7/99) 3.43 4e-06 2.1e-05
GO:0044093 positive regulation of molecular function 6.06% (6/99) 3.83 4e-06 2.1e-05
GO:0050794 regulation of cellular process 32.32% (32/99) 1.15 6e-06 2.9e-05
GO:0006796 phosphate-containing compound metabolic process 20.2% (20/99) 1.62 6e-06 2.9e-05
GO:0065008 regulation of biological quality 18.18% (18/99) 1.72 7e-06 3.4e-05
GO:0006793 phosphorus metabolic process 20.2% (20/99) 1.6 7e-06 3.4e-05
GO:0050790 regulation of catalytic activity 7.07% (7/99) 3.29 8e-06 3.7e-05
GO:1901135 carbohydrate derivative metabolic process 15.15% (15/99) 1.93 8e-06 4e-05
GO:0043170 macromolecule metabolic process 35.35% (35/99) 1.05 8e-06 4e-05
GO:1905156 negative regulation of photosynthesis 3.03% (3/99) 6.13 1e-05 4.4e-05
GO:0010242 oxygen evolving activity 2.02% (2/99) 8.13 1.3e-05 5.8e-05
GO:0009783 photosystem II antenna complex 2.02% (2/99) 8.13 1.3e-05 5.8e-05
GO:0071840 cellular component organization or biogenesis 26.26% (26/99) 1.28 1.4e-05 6.2e-05
GO:0003727 single-stranded RNA binding 4.04% (4/99) 4.77 1.4e-05 6.4e-05
GO:0006733 oxidoreduction coenzyme metabolic process 9.09% (9/99) 2.56 2.2e-05 0.000101
GO:0044464 cell part 92.93% (92/99) 0.27 2.8e-05 0.000125
GO:0065009 regulation of molecular function 7.07% (7/99) 2.98 3.1e-05 0.000138
GO:0016109 tetraterpenoid biosynthetic process 5.05% (5/99) 3.79 3.2e-05 0.000142
GO:0016117 carotenoid biosynthetic process 5.05% (5/99) 3.79 3.2e-05 0.000142
GO:0009902 chloroplast relocation 5.05% (5/99) 3.76 3.5e-05 0.000154
GO:0051667 establishment of plastid localization 5.05% (5/99) 3.76 3.5e-05 0.000154
GO:0019750 chloroplast localization 5.05% (5/99) 3.75 3.7e-05 0.00016
GO:0051644 plastid localization 5.05% (5/99) 3.75 3.7e-05 0.00016
GO:0030093 chloroplast photosystem I 2.02% (2/99) 7.54 3.8e-05 0.000164
GO:0016116 carotenoid metabolic process 5.05% (5/99) 3.72 4e-05 0.000171
GO:0016108 tetraterpenoid metabolic process 5.05% (5/99) 3.72 4e-05 0.000171
GO:0051656 establishment of organelle localization 5.05% (5/99) 3.72 4e-05 0.000171
GO:0043167 ion binding 18.18% (18/99) 1.53 4e-05 0.000173
GO:0008187 poly-pyrimidine tract binding 3.03% (3/99) 5.46 4.1e-05 0.000173
GO:0008266 poly(U) RNA binding 3.03% (3/99) 5.46 4.1e-05 0.000173
GO:0006732 coenzyme metabolic process 10.1% (10/99) 2.27 4.5e-05 0.000186
GO:0046496 nicotinamide nucleotide metabolic process 8.08% (8/99) 2.59 5.8e-05 0.000239
GO:0009965 leaf morphogenesis 6.06% (6/99) 3.16 6e-05 0.000249
GO:0019362 pyridine nucleotide metabolic process 8.08% (8/99) 2.58 6.2e-05 0.000255
GO:0031408 oxylipin biosynthetic process 3.03% (3/99) 5.25 6.5e-05 0.000267
GO:0016491 oxidoreductase activity 13.13% (13/99) 1.84 6.8e-05 0.000274
GO:0051234 establishment of localization 24.24% (24/99) 1.21 6.8e-05 0.000275
GO:0072524 pyridine-containing compound metabolic process 8.08% (8/99) 2.55 7.1e-05 0.000284
GO:0031407 oxylipin metabolic process 3.03% (3/99) 5.13 8.5e-05 0.00034
GO:0009735 response to cytokinin 6.06% (6/99) 3.07 8.5e-05 0.000341
GO:0051188 cofactor biosynthetic process 9.09% (9/99) 2.26 0.000114 0.000453
GO:0033559 unsaturated fatty acid metabolic process 4.04% (4/99) 4.0 0.000118 0.000465
GO:0006636 unsaturated fatty acid biosynthetic process 4.04% (4/99) 4.0 0.000118 0.000465
GO:0031969 chloroplast membrane 4.04% (4/99) 3.86 0.000171 0.00067
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 6.06% (6/99) 2.88 0.000174 0.000678
GO:0015713 phosphoglycerate transmembrane transport 2.02% (2/99) 6.54 0.000189 0.000722
GO:0015120 phosphoglycerate transmembrane transporter activity 2.02% (2/99) 6.54 0.000189 0.000722
GO:0042873 aldonate transmembrane transport 2.02% (2/99) 6.54 0.000189 0.000722
GO:0042879 aldonate transmembrane transporter activity 2.02% (2/99) 6.54 0.000189 0.000722
GO:0046490 isopentenyl diphosphate metabolic process 6.06% (6/99) 2.85 0.000191 0.000725
GO:0009240 isopentenyl diphosphate biosynthetic process 6.06% (6/99) 2.85 0.000191 0.000725
GO:0051179 localization 24.24% (24/99) 1.11 0.000196 0.000742
GO:1901363 heterocyclic compound binding 23.23% (23/99) 1.13 0.000225 0.000845
GO:0097159 organic cyclic compound binding 23.23% (23/99) 1.12 0.000247 0.000925
GO:1990066 energy quenching 2.02% (2/99) 6.32 0.000263 0.000973
GO:0010196 nonphotochemical quenching 2.02% (2/99) 6.32 0.000263 0.000973
GO:0042170 plastid membrane 4.04% (4/99) 3.7 0.000262 0.000977
GO:0009533 chloroplast stromal thylakoid 2.02% (2/99) 6.13 0.00035 0.001289
GO:0051640 organelle localization 5.05% (5/99) 2.99 0.000435 0.001594
GO:0055114 oxidation-reduction process 7.07% (7/99) 2.33 0.000499 0.00182
GO:0009706 chloroplast inner membrane 3.03% (3/99) 4.25 0.00053 0.001924
GO:0010206 photosystem II repair 2.02% (2/99) 5.8 0.00056 0.002018
GO:0030091 protein repair 2.02% (2/99) 5.8 0.00056 0.002018
GO:0019216 regulation of lipid metabolic process 3.03% (3/99) 4.19 0.000604 0.002167
GO:0009528 plastid inner membrane 3.03% (3/99) 4.16 0.000644 0.002299
GO:1905392 plant organ morphogenesis 6.06% (6/99) 2.45 0.000841 0.002992
GO:0006810 transport 21.21% (21/99) 1.06 0.000853 0.00302
GO:0018130 heterocycle biosynthetic process 12.12% (12/99) 1.53 0.000898 0.003153
GO:0008150 biological_process 87.88% (87/99) 0.24 0.000896 0.003161
GO:1990204 oxidoreductase complex 4.04% (4/99) 3.18 0.001013 0.003542
GO:1905039 carboxylic acid transmembrane transport 2.02% (2/99) 5.32 0.001123 0.003879
GO:0034219 carbohydrate transmembrane transport 2.02% (2/99) 5.32 0.001123 0.003879
GO:1903825 organic acid transmembrane transport 2.02% (2/99) 5.32 0.001123 0.003879
GO:0045893 positive regulation of transcription, DNA-templated 7.07% (7/99) 2.11 0.001217 0.004138
GO:0051254 positive regulation of RNA metabolic process 7.07% (7/99) 2.11 0.001217 0.004138
GO:1902680 positive regulation of RNA biosynthetic process 7.07% (7/99) 2.11 0.001217 0.004138
GO:1903508 positive regulation of nucleic acid-templated transcription 7.07% (7/99) 2.11 0.001217 0.004138
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 7.07% (7/99) 2.07 0.001431 0.004847
GO:0009117 nucleotide metabolic process 9.09% (9/99) 1.75 0.001492 0.005032
GO:0006753 nucleoside phosphate metabolic process 9.09% (9/99) 1.74 0.001533 0.005151
GO:0019438 aromatic compound biosynthetic process 13.13% (13/99) 1.36 0.001602 0.005361
GO:0010628 positive regulation of gene expression 7.07% (7/99) 2.04 0.001615 0.005385
GO:0032958 inositol phosphate biosynthetic process 3.03% (3/99) 3.69 0.001655 0.005452
GO:0010264 myo-inositol hexakisphosphate biosynthetic process 3.03% (3/99) 3.69 0.001655 0.005452
GO:0033517 myo-inositol hexakisphosphate metabolic process 3.03% (3/99) 3.69 0.001655 0.005452
GO:0015718 monocarboxylic acid transport 2.02% (2/99) 5.04 0.001666 0.005467
GO:0010557 positive regulation of macromolecule biosynthetic process 7.07% (7/99) 2.03 0.001674 0.005473
GO:0031328 positive regulation of cellular biosynthetic process 7.07% (7/99) 2.01 0.001818 0.005919
GO:0046173 polyol biosynthetic process 3.03% (3/99) 3.62 0.001884 0.006112
GO:0046777 protein autophosphorylation 4.04% (4/99) 2.93 0.001951 0.006305
GO:0051173 positive regulation of nitrogen compound metabolic process 7.07% (7/99) 1.98 0.002039 0.006565
GO:0006633 fatty acid biosynthetic process 4.04% (4/99) 2.91 0.002049 0.006573
GO:0008028 monocarboxylic acid transmembrane transporter activity 2.02% (2/99) 4.88 0.002085 0.006662
GO:0042793 plastid transcription 3.03% (3/99) 3.56 0.002132 0.006787
GO:0010604 positive regulation of macromolecule metabolic process 7.07% (7/99) 1.96 0.002206 0.006996
GO:0071482 cellular response to light stimulus 3.03% (3/99) 3.5 0.002399 0.007498
GO:0071478 cellular response to radiation 3.03% (3/99) 3.5 0.002399 0.007498
GO:0016114 terpenoid biosynthetic process 5.05% (5/99) 2.44 0.002384 0.007506
GO:0031325 positive regulation of cellular metabolic process 7.07% (7/99) 1.94 0.002383 0.007531
GO:0050896 response to stimulus 33.33% (33/99) 0.68 0.002536 0.007897
GO:0104004 cellular response to environmental stimulus 4.04% (4/99) 2.81 0.002593 0.008014
GO:0071214 cellular response to abiotic stimulus 4.04% (4/99) 2.81 0.002593 0.008014
GO:0008654 phospholipid biosynthetic process 6.06% (6/99) 2.12 0.002646 0.008149
GO:0055086 nucleobase-containing small molecule metabolic process 9.09% (9/99) 1.6 0.002953 0.009063
GO:0016144 S-glycoside biosynthetic process 4.04% (4/99) 2.73 0.003228 0.009799
GO:0019758 glycosinolate biosynthetic process 4.04% (4/99) 2.73 0.003228 0.009799
GO:0019761 glucosinolate biosynthetic process 4.04% (4/99) 2.73 0.003228 0.009799
GO:0010277 chlorophyllide a oxygenase [overall] activity 1.01% (1/99) 8.13 0.00358 0.010143
GO:0045550 geranylgeranyl reductase activity 1.01% (1/99) 8.13 0.00358 0.010143
GO:0006740 NADPH regeneration 1.01% (1/99) 8.13 0.00358 0.010143
GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) 1.01% (1/99) 8.13 0.00358 0.010143
GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity 1.01% (1/99) 8.13 0.00358 0.010143
GO:0060700 regulation of ribonuclease activity 1.01% (1/99) 8.13 0.00358 0.010143
GO:0032074 negative regulation of nuclease activity 1.01% (1/99) 8.13 0.00358 0.010143
GO:0048529 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity 1.01% (1/99) 8.13 0.00358 0.010143
GO:1905778 negative regulation of exonuclease activity 1.01% (1/99) 8.13 0.00358 0.010143
GO:0060701 negative regulation of ribonuclease activity 1.01% (1/99) 8.13 0.00358 0.010143
GO:0009540 zeaxanthin epoxidase [overall] activity 1.01% (1/99) 8.13 0.00358 0.010143
GO:0009780 photosynthetic NADP+ reduction 1.01% (1/99) 8.13 0.00358 0.010143
GO:1901917 regulation of exoribonuclease activity 1.01% (1/99) 8.13 0.00358 0.010143
GO:1901918 negative regulation of exoribonuclease activity 1.01% (1/99) 8.13 0.00358 0.010143
GO:1905777 regulation of exonuclease activity 1.01% (1/99) 8.13 0.00358 0.010143
GO:0032069 regulation of nuclease activity 1.01% (1/99) 8.13 0.00358 0.010143
GO:0046406 magnesium protoporphyrin IX methyltransferase activity 1.01% (1/99) 8.13 0.00358 0.010143
GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity 1.01% (1/99) 8.13 0.00358 0.010143
GO:0006644 phospholipid metabolic process 6.06% (6/99) 2.04 0.003518 0.010643
GO:0005488 binding 33.33% (33/99) 0.64 0.003779 0.010672
GO:0006721 terpenoid metabolic process 5.05% (5/99) 2.3 0.003543 0.010679
GO:0006090 pyruvate metabolic process 6.06% (6/99) 2.01 0.003822 0.010757
GO:1901659 glycosyl compound biosynthetic process 4.04% (4/99) 2.65 0.003884 0.010895
GO:0015605 organophosphate ester transmembrane transporter activity 2.02% (2/99) 4.43 0.003898 0.0109
GO:0043647 inositol phosphate metabolic process 3.03% (3/99) 3.25 0.003918 0.010919
GO:0098656 anion transmembrane transport 2.02% (2/99) 4.37 0.0042 0.011668
GO:0008299 isoprenoid biosynthetic process 5.05% (5/99) 2.24 0.004223 0.011692
GO:0044271 cellular nitrogen compound biosynthetic process 12.12% (12/99) 1.25 0.004441 0.012256
GO:0004497 monooxygenase activity 3.03% (3/99) 3.14 0.004854 0.013352
GO:0009891 positive regulation of biosynthetic process 7.07% (7/99) 1.74 0.005194 0.014241
GO:0090407 organophosphate biosynthetic process 9.09% (9/99) 1.46 0.005411 0.014788
GO:0009668 plastid membrane organization 4.04% (4/99) 2.5 0.005553 0.015081
GO:0010027 thylakoid membrane organization 4.04% (4/99) 2.5 0.005553 0.015081
GO:0008643 carbohydrate transport 2.02% (2/99) 4.13 0.005867 0.015882
GO:0006720 isoprenoid metabolic process 5.05% (5/99) 2.13 0.005932 0.016006
GO:1901362 organic cyclic compound biosynthetic process 13.13% (13/99) 1.14 0.005951 0.016008
GO:0019757 glycosinolate metabolic process 4.04% (4/99) 2.47 0.006061 0.016151
GO:0019760 glucosinolate metabolic process 4.04% (4/99) 2.47 0.006061 0.016151
GO:0016143 S-glycoside metabolic process 4.04% (4/99) 2.47 0.006061 0.016151
GO:0009073 aromatic amino acid family biosynthetic process 3.03% (3/99) 3.01 0.00624 0.016523
GO:0019693 ribose phosphate metabolic process 7.07% (7/99) 1.69 0.006261 0.016528
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen 2.02% (2/99) 4.08 0.006231 0.016552
GO:0061024 membrane organization 4.04% (4/99) 2.41 0.006937 0.018254
GO:0071461 cellular response to redox state 1.01% (1/99) 7.13 0.007147 0.018298
GO:0009782 photosystem I antenna complex 1.01% (1/99) 7.13 0.007147 0.018298
GO:0089721 phosphoenolpyruvate transmembrane transporter activity 1.01% (1/99) 7.13 0.007147 0.018298
GO:0071277 cellular response to calcium ion 1.01% (1/99) 7.13 0.007147 0.018298
GO:0080085 signal recognition particle, chloroplast targeting 1.01% (1/99) 7.13 0.007147 0.018298
GO:0015121 phosphoenolpyruvate:phosphate antiporter activity 1.01% (1/99) 7.13 0.007147 0.018298
GO:0010270 photosystem II oxygen evolving complex assembly 1.01% (1/99) 7.13 0.007147 0.018298
GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity 1.01% (1/99) 7.13 0.007147 0.018298
GO:0009893 positive regulation of metabolic process 7.07% (7/99) 1.65 0.007119 0.018676
GO:0042221 response to chemical 20.2% (20/99) 0.82 0.007651 0.019472
GO:0019751 polyol metabolic process 3.03% (3/99) 2.9 0.007651 0.01953
GO:1901264 carbohydrate derivative transport 2.02% (2/99) 3.88 0.008201 0.020808
GO:0046165 alcohol biosynthetic process 3.03% (3/99) 2.85 0.008422 0.021305
GO:0008610 lipid biosynthetic process 9.09% (9/99) 1.35 0.008722 0.021999
GO:0005982 starch metabolic process 4.04% (4/99) 2.31 0.00893 0.022457
GO:0031304 intrinsic component of mitochondrial inner membrane 1.01% (1/99) 6.54 0.010701 0.025551
GO:0051002 ligase activity, forming nitrogen-metal bonds 1.01% (1/99) 6.54 0.010701 0.025551
GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes 1.01% (1/99) 6.54 0.010701 0.025551
GO:0009517 PSII associated light-harvesting complex II 1.01% (1/99) 6.54 0.010701 0.025551
GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity 1.01% (1/99) 6.54 0.010701 0.025551
GO:0009503 thylakoid light-harvesting complex 1.01% (1/99) 6.54 0.010701 0.025551
GO:0008883 glutamyl-tRNA reductase activity 1.01% (1/99) 6.54 0.010701 0.025551
GO:0080005 photosystem stoichiometry adjustment 1.01% (1/99) 6.54 0.010701 0.025551
GO:0080045 quercetin 3'-O-glucosyltransferase activity 1.01% (1/99) 6.54 0.010701 0.025551
GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor 1.01% (1/99) 6.54 0.010701 0.025551
GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor 1.01% (1/99) 6.54 0.010701 0.025551
GO:0004096 catalase activity 1.01% (1/99) 6.54 0.010701 0.025551
GO:0042550 photosystem I stabilization 1.01% (1/99) 6.54 0.010701 0.025551
GO:0050347 trans-octaprenyltranstransferase activity 1.01% (1/99) 6.54 0.010701 0.025551
GO:0016851 magnesium chelatase activity 1.01% (1/99) 6.54 0.010701 0.025551
GO:1901700 response to oxygen-containing compound 14.14% (14/99) 0.98 0.010879 0.025901
GO:0015297 antiporter activity 3.03% (3/99) 2.73 0.010542 0.026432
GO:0006468 protein phosphorylation 7.07% (7/99) 1.54 0.010614 0.026535
GO:1901657 glycosyl compound metabolic process 4.04% (4/99) 2.23 0.010648 0.026542
GO:0019866 organelle inner membrane 3.03% (3/99) 2.7 0.011233 0.02667
GO:0010033 response to organic substance 15.15% (15/99) 0.93 0.011296 0.026745
GO:0030154 cell differentiation 6.06% (6/99) 1.68 0.011457 0.027052
GO:0015714 phosphoenolpyruvate transport 1.01% (1/99) 6.13 0.014243 0.032989
GO:0035436 triose phosphate transmembrane transport 1.01% (1/99) 6.13 0.014243 0.032989
GO:0042389 omega-3 fatty acid desaturase activity 1.01% (1/99) 6.13 0.014243 0.032989
GO:0051775 response to redox state 1.01% (1/99) 6.13 0.014243 0.032989
GO:0015717 triose phosphate transport 1.01% (1/99) 6.13 0.014243 0.032989
GO:0010007 magnesium chelatase complex 1.01% (1/99) 6.13 0.014243 0.032989
GO:0071917 triose-phosphate transmembrane transporter activity 1.01% (1/99) 6.13 0.014243 0.032989
GO:0015748 organophosphate ester transport 2.02% (2/99) 3.45 0.014432 0.033336
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 3.03% (3/99) 2.55 0.014798 0.034087
GO:1901505 carbohydrate derivative transmembrane transporter activity 2.02% (2/99) 3.43 0.014975 0.034402
GO:0000023 maltose metabolic process 3.03% (3/99) 2.46 0.01739 0.039842
GO:0072330 monocarboxylic acid biosynthetic process 7.07% (7/99) 1.38 0.018354 0.041939
GO:0009653 anatomical structure morphogenesis 9.09% (9/99) 1.16 0.019523 0.044489
GO:0048522 positive regulation of cellular process 7.07% (7/99) 1.35 0.020335 0.046215
GO:0016987 sigma factor activity 1.01% (1/99) 5.54 0.021289 0.047125
GO:0016123 xanthophyll biosynthetic process 1.01% (1/99) 5.54 0.021289 0.047125
GO:0009643 photosynthetic acclimation 1.01% (1/99) 5.54 0.021289 0.047125
GO:0010236 plastoquinone biosynthetic process 1.01% (1/99) 5.54 0.021289 0.047125
GO:0045038 protein import into chloroplast thylakoid membrane 1.01% (1/99) 5.54 0.021289 0.047125
GO:0009904 chloroplast accumulation movement 1.01% (1/99) 5.54 0.021289 0.047125
GO:0009769 photosynthesis, light harvesting in photosystem II 1.01% (1/99) 5.54 0.021289 0.047125
GO:0050821 protein stabilization 1.01% (1/99) 5.54 0.021289 0.047125
GO:0031647 regulation of protein stability 1.01% (1/99) 5.54 0.021289 0.047125
GO:0048653 anther development 2.02% (2/99) 3.17 0.020869 0.047303
GO:0006655 phosphatidylglycerol biosynthetic process 2.02% (2/99) 3.15 0.021503 0.047475
GO:0046471 phosphatidylglycerol metabolic process 2.02% (2/99) 3.13 0.022146 0.048767
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_20 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_98 0.025 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_150 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_175 0.03 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_23 0.065 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_76 0.025 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_107 0.036 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_115 0.029 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_124 0.037 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_153 0.052 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_179 0.097 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_197 0.031 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_211 0.025 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_237 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_3 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_98 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_65 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_111 0.038 Archaeplastida Compare
Gingko biloba HCCA Cluster_133 0.078 Archaeplastida Compare
Gingko biloba HCCA Cluster_135 0.03 Archaeplastida Compare
Gingko biloba HCCA Cluster_171 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_250 0.043 Archaeplastida Compare
Gingko biloba HCCA Cluster_269 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_3 0.057 Archaeplastida Compare
Zea mays HCCA Cluster_34 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_39 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_133 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_146 0.2 Archaeplastida Compare
Zea mays HCCA Cluster_148 0.03 Archaeplastida Compare
Zea mays HCCA Cluster_178 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_208 0.078 Archaeplastida Compare
Zea mays HCCA Cluster_319 0.036 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_4 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_6 0.048 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_52 0.197 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_145 0.029 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_177 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_32 0.036 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_46 0.056 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_88 0.211 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_108 0.033 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_199 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_224 0.036 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_245 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_260 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_294 0.056 Archaeplastida Compare
Picea abies HCCA Cluster_53 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_145 0.099 Archaeplastida Compare
Picea abies HCCA Cluster_269 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_315 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_324 0.06 Archaeplastida Compare
Picea abies HCCA Cluster_343 0.056 Archaeplastida Compare
Picea abies HCCA Cluster_456 0.077 Archaeplastida Compare
Picea abies HCCA Cluster_465 0.033 Archaeplastida Compare
Oryza sativa HCCA Cluster_63 0.036 Archaeplastida Compare
Oryza sativa HCCA Cluster_90 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_148 0.211 Archaeplastida Compare
Oryza sativa HCCA Cluster_189 0.048 Archaeplastida Compare
Oryza sativa HCCA Cluster_224 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_243 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_248 0.052 Archaeplastida Compare
Oryza sativa HCCA Cluster_321 0.034 Archaeplastida Compare
Oryza sativa HCCA Cluster_324 0.051 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_2 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_40 0.028 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_97 0.083 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_140 0.045 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_25 0.073 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_73 0.044 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_110 0.136 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_125 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_128 0.081 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_147 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_169 0.059 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_271 0.033 Archaeplastida Compare
Vitis vinifera HCCA Cluster_13 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_29 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_47 0.056 Archaeplastida Compare
Vitis vinifera HCCA Cluster_88 0.073 Archaeplastida Compare
Vitis vinifera HCCA Cluster_93 0.047 Archaeplastida Compare
Vitis vinifera HCCA Cluster_124 0.025 Archaeplastida Compare
Vitis vinifera HCCA Cluster_160 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_162 0.029 Archaeplastida Compare
Vitis vinifera HCCA Cluster_176 0.144 Archaeplastida Compare
Vitis vinifera HCCA Cluster_245 0.031 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_1 0.032 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_61 0.136 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_79 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_85 0.019 Archaeplastida Compare
Sequences (99) (download table)

InterPro Domains

GO Terms

Family Terms