AT3G10590

Description : Duplicated homeodomain-like superfamily protein

Gene families : OG0000067 (Archaeplastida) Phylogenetic Tree(s): OG0000067_tree ,
OG_05_0017394 (LandPlants) Phylogenetic Tree(s): OG_05_0017394_tree ,
OG_06_0016926 (SeedPlants) Phylogenetic Tree(s): OG_06_0016926_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G10590
Cluster	HCCA: Cluster_170

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00215750	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00045p00040070	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00045p00096080	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.05	Archaeplastida
AT1G74840	No alias	Homeodomain-like superfamily protein	0.04	Archaeplastida
AT5G47290	No alias	myb family transcription factor	0.05	Archaeplastida
AT5G58900	No alias	Homeodomain-like transcriptional regulator	0.03	Archaeplastida
Cpa\|evm.model.tig00000455.6	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.01	Archaeplastida
GSVIVT01013684001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01013871001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01016370001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
Gb_05002	No alias	transcription factor (MYB-related)	0.04	Archaeplastida
Gb_08692	No alias	transcription factor (MYB-related)	0.02	Archaeplastida
LOC_Os01g09640.1	No alias	transcription factor (MYB-related)	0.03	Archaeplastida
LOC_Os02g47744.1	No alias	transcription factor (MYB-related)	0.02	Archaeplastida
LOC_Os04g27410.1	No alias	transcription factor (MYB-related)	0.02	Archaeplastida
LOC_Os06g07640.1	No alias	transcription factor (MYB-related)	0.03	Archaeplastida
MA_16729g0010	No alias	transcription factor (MYB-related)	0.02	Archaeplastida
MA_209399g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_488767g0010	No alias	transcription factor (MYB-related)	0.03	Archaeplastida
MA_6326342g0010	No alias	transcription factor (MYB-related)	0.03	Archaeplastida
Solyc02g082390.1.1	No alias	transcription factor (MYB-related)	0.07	Archaeplastida
Solyc03g119740.3.1	No alias	transcription factor (MYB-related)	0.01	Archaeplastida
Solyc04g005100.3.1	No alias	transcription factor (MYB-related)	0.03	Archaeplastida
Solyc04g080500.3.1	No alias	transcription factor (MYB-related)	0.02	Archaeplastida
Solyc05g052610.3.1	No alias	transcription factor (MYB-related)	0.04	Archaeplastida
Solyc12g008800.3.1	No alias	transcription factor (MYB-related)	0.03	Archaeplastida
Zm00001e020633_P001	No alias	transcription factor (MYB-related)	0.02	Archaeplastida
Zm00001e025783_P002	No alias	transcription factor (MYB-related)	0.02	Archaeplastida
Zm00001e027835_P005	No alias	transcription factor (MYB-related)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Pp3c1_36690V3.1 ecc graph

ECC network: Pp3c1_36690V3.1

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0001944	vasculature development	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004034	aldose 1-epimerase activity	IEP	Neighborhood
MF	GO:0004126	cytidine deaminase activity	IEP	Neighborhood
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004567	beta-mannosidase activity	IEP	Neighborhood
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
MF	GO:0005365	myo-inositol transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005366	myo-inositol:proton symporter activity	IEP	Neighborhood
CC	GO:0005615	extracellular space	IEP	Neighborhood
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	Neighborhood
BP	GO:0006216	cytidine catabolic process	IEP	Neighborhood
BP	GO:0006624	vacuolar protein processing	IEP	Neighborhood
MF	GO:0008171	O-methyltransferase activity	IEP	Neighborhood
BP	GO:0008655	pyrimidine-containing compound salvage	IEP	Neighborhood
BP	GO:0009116	nucleoside metabolic process	IEP	Neighborhood
BP	GO:0009119	ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0009164	nucleoside catabolic process	IEP	Neighborhood
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Neighborhood
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0009806	lignan metabolic process	IEP	Neighborhood
BP	GO:0009807	lignan biosynthetic process	IEP	Neighborhood
BP	GO:0009813	flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0009845	seed germination	IEP	Neighborhood
BP	GO:0009972	cytidine deamination	IEP	Neighborhood
BP	GO:0010023	proanthocyanidin biosynthetic process	IEP	Neighborhood
BP	GO:0010214	seed coat development	IEP	Neighborhood
MF	GO:0010340	carboxyl-O-methyltransferase activity	IEP	Neighborhood
MF	GO:0010341	gibberellin carboxyl-O-methyltransferase activity	IEP	Neighborhood
MF	GO:0015166	polyol transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015791	polyol transport	IEP	Neighborhood
BP	GO:0015798	myo-inositol transport	IEP	Neighborhood
BP	GO:0015850	organic hydroxy compound transport	IEP	Neighborhood
MF	GO:0015923	mannosidase activity	IEP	Neighborhood
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	Neighborhood
BP	GO:0016485	protein processing	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Neighborhood
MF	GO:0016985	mannan endo-1,4-beta-mannosidase activity	IEP	Neighborhood
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Neighborhood
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	Neighborhood
MF	GO:0019239	deaminase activity	IEP	Neighborhood
BP	GO:0019439	aromatic compound catabolic process	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
BP	GO:0030497	fatty acid elongation	IEP	Neighborhood
CC	GO:0031012	extracellular matrix	IEP	Neighborhood
CC	GO:0031312	extrinsic component of organelle membrane	IEP	Neighborhood
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Neighborhood
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	Neighborhood
CC	GO:0042406	extrinsic component of endoplasmic reticulum membrane	IEP	Neighborhood
BP	GO:0042454	ribonucleoside catabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Neighborhood
BP	GO:0044282	small molecule catabolic process	IEP	Neighborhood
CC	GO:0044421	extracellular region part	IEP	Neighborhood
MF	GO:0045552	dihydrokaempferol 4-reductase activity	IEP	Neighborhood
BP	GO:0046087

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AT3G10590

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation

ECC network: Pp3c1_36690V3.1