Heatmap: Cluster_2 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Ovule
Ovule, mature
Ovule, pollinated
Strobilus, female
Ovulate strobilus
Microstrobilus
Kernel
Leaf
Leaf, female
Leaf, male
Leaf, salicylic acid
Leaf, seedling
Leaf, truncation control
Leaf, truncation treatment
Leaf, water
Yellow-green stripe leaves
Green leaves
Stem
Cambium
Root
-1.72 -0.85 -0.94 -1.37 -1.48 -2.47 -1.79 -0.04 1.47 1.65 1.31 -0.05 -1.74 -1.78 1.1 0.54 0.06 -0.51 -0.2 -1.78
0.07 -1.12 -1.15 -2.6 -4.47 -3.48 -3.89 -0.34 0.46 0.98 2.32 0.44 0.43 -0.82 2.01 -5.36 0.05 -3.72 -3.45 -5.66
- - - - - - - -0.47 0.3 1.78 1.87 -0.14 0.95 0.46 1.83 - 1.41 - - -0.92
- - - - 1.0 - - 1.16 - - - 1.75 2.13 - - - - - 2.38 1.51
-0.73 -1.13 0.22 -0.88 -0.83 -1.55 -1.73 0.31 -0.19 0.39 1.14 1.07 0.2 -0.28 0.96 -1.6 0.73 -0.51 0.29 -1.15
- - - - 1.12 - - 1.49 -0.1 - 1.95 - 1.61 0.17 2.42 - - - - -0.51
-1.72 -0.8 -1.47 -0.84 0.76 -0.13 - 1.13 -0.88 -0.15 -2.03 - 3.03 0.78 -1.39 - - 0.49 - -3.64
-1.82 - - - - - - -0.61 0.36 1.78 2.1 -2.63 - - 1.79 2.5 -0.74 - -2.33 -
-0.18 0.14 -1.5 0.21 0.12 -2.3 -1.56 0.52 -1.07 -0.5 1.76 -4.28 -0.71 -0.78 1.33 0.85 -0.42 -1.05 0.41 -0.41
-1.49 -1.67 -2.83 -0.13 - -1.63 - 0.91 0.94 0.83 0.46 -3.14 1.17 0.53 1.1 1.08 0.85 - 0.2 -
-1.24 -0.64 -0.08 -3.9 -0.25 0.59 1.53 0.63 -0.99 -0.92 0.88 -0.25 0.42 0.42 0.93 -1.62 -0.56 -2.01 -3.91 0.61
-0.87 - - - - - -5.09 1.21 1.14 -5.05 -0.66 - 2.75 2.6 0.38 - - - -2.75 -
1.35 - -1.77 2.26 1.47 1.36 0.05 0.72 -0.46 -1.01 - - -0.76 -3.27 -0.85 - -1.27 0.05 -1.25 -
0.7 1.34 0.34 - -1.73 -1.62 -0.21 0.9 0.54 -0.34 -13.64 -2.77 0.51 -1.3 - 1.2 - -0.37 1.97 -11.69
-2.76 -3.52 -3.16 -3.66 -3.16 1.94 -8.47 1.38 0.46 1.19 -0.06 -0.36 1.43 0.43 0.1 -2.21 -1.64 0.44 -0.83 -4.31
-4.28 -6.77 -8.64 -4.46 -3.57 -0.0 -8.02 1.9 0.54 0.97 0.02 -0.15 2.37 1.4 0.17 -2.27 -1.61 -2.87 -3.15 -6.99
-1.19 - - -0.25 -1.54 -1.2 -1.02 0.26 0.85 1.41 1.96 -2.74 0.99 -0.32 1.77 -0.84 -0.94 -2.09 -3.51 -2.73
-2.55 -2.4 -2.49 -0.86 -3.56 -2.29 -0.81 -0.22 1.9 1.88 1.23 -0.96 -4.9 -3.96 0.43 1.66 0.1 - -1.77 -0.09
-0.37 0.75 0.35 - -1.9 -0.66 1.27 0.86 -0.06 0.0 0.74 0.84 0.89 -0.29 -2.22 -1.71 0.68 -0.58 -1.92 -
- - - - - - 4.13 1.3 - - - - - - - - - - - -
1.49 - - 3.13 - - - 0.42 - - - - - - - - - 2.83 - -
- - 1.16 - - - -0.61 -0.55 1.37 2.37 1.56 -1.93 -0.32 -1.45 1.4 0.71 - - - -
1.06 - -2.07 0.23 -3.06 - -2.72 0.37 0.3 1.74 1.12 -1.78 0.72 -0.37 1.56 -1.56 0.61 -1.6 -2.0 -3.36
-0.05 - -2.41 0.3 -0.66 - -3.1 2.14 -0.07 2.22 -2.49 0.54 -0.2 0.53 -0.55 - - 1.15 - -
-2.27 -3.65 -5.13 -4.11 -4.17 1.51 0.09 0.07 -0.89 -0.6 -0.06 0.9 -1.27 -1.45 -0.36 0.4 1.11 -0.51 -1.02 2.12
0.41 -1.45 -0.01 1.26 -1.47 -3.99 - 1.87 2.07 0.58 -2.96 0.33 0.05 -1.03 -2.99 -1.58 -0.59 -1.28 -0.52 -
0.47 0.89 0.79 0.84 0.93 -0.91 -0.63 0.16 -1.49 -0.69 -0.43 -2.17 0.85 -0.75 -0.71 - - 1.49 -0.21 -1.25
- - -1.22 - - -1.02 0.03 1.22 0.14 - -0.25 -3.02 1.4 1.25 0.92 1.73 -1.11 - 0.85 0.22
-3.82 -7.33 -2.44 -1.43 -1.49 -0.33 - 0.74 -0.87 -0.8 -0.96 2.18 -0.16 0.73 -1.01 -2.72 1.05 2.06 -1.31 -0.9
-7.04 - - - - - - -1.96 1.73 2.79 0.0 - 0.0 0.17 0.87 2.06 -1.48 - - -6.35
- - - - - - - - - 4.32 - - - - - - - - - -
-2.14 - - - - - 0.13 -0.08 2.09 2.35 -0.22 - - -0.6 -1.38 2.19 0.54 - -1.14 -
0.04 1.73 1.07 - -0.38 -2.4 -2.16 0.12 -0.47 -0.01 -0.52 -3.48 - - -0.98 1.3 -3.01 -0.78 - 2.35
1.37 - 0.38 1.4 -1.21 - -2.16 0.81 -1.32 -1.14 -1.35 - 1.69 1.05 -0.95 -0.61 0.01 0.7 -0.5 -
- - - - - - - - - 3.79 - 2.63 - - - - - - - -
-0.72 -2.24 - -0.7 -0.33 0.59 -0.76 0.71 -0.5 -0.09 0.19 -0.81 0.92 1.09 -0.83 -0.89 -0.04 -0.23 -0.49 1.6
-1.47 -2.01 -2.69 -2.06 0.13 1.31 0.2 -0.1 0.17 0.21 -0.68 -1.25 -0.42 -0.4 -0.55 -0.12 0.56 0.4 -0.17 1.68
-2.51 -4.13 -4.29 -1.0 -0.98 1.11 -1.14 0.27 0.55 0.55 -0.82 -0.86 -0.25 0.14 -0.64 0.53 0.5 -1.0 -0.82 2.11
-3.54 - -0.31 - -0.12 -0.49 -2.2 1.48 -1.67 - 2.01 - 0.76 0.41 2.56 - -1.82 -27.98 -4.79 -0.2
-8.12 -4.96 - -5.42 -2.79 0.08 - 1.04 -1.25 -2.16 -1.76 0.8 3.18 1.81 -1.5 -4.18 -2.16 -0.35 - -
- - - - -0.33 - 0.42 0.46 1.51 2.52 1.11 -0.58 0.08 0.44 0.03 -1.14 - - -0.98 -0.51
-2.29 -4.09 -2.78 0.42 1.11 1.39 -2.73 0.61 -0.28 -0.25 -4.3 0.96 -1.65 -1.21 -4.04 -0.49 -0.25 0.68 -0.01 1.67
- - - - - - -1.58 1.44 0.83 0.69 0.46 - 1.56 1.11 1.39 0.53 1.35 - -1.07 -
- - - - - - - -0.17 - 4.26 - - - - - - - - - -
2.37 - -0.42 1.21 0.53 -0.23 -1.42 1.51 -2.16 - -0.66 -2.52 0.27 - - 0.14 - 1.26 -0.99 -
0.13 0.56 1.79 -0.38 0.01 0.47 -1.03 0.65 -0.95 -1.03 -0.18 -0.06 -1.05 -1.4 -0.32 -0.66 0.26 -0.01 -0.61 -0.43
-1.13 1.58 -1.17 1.69 0.42 0.03 0.28 1.04 -0.75 -1.98 -1.19 - 1.4 -1.56 0.23 - -0.67 - 0.23 -
- - - - - - 0.63 0.66 -0.69 - - - 1.29 1.87 2.83 1.47 - - -1.98 -
-0.99 -2.27 - -0.92 0.9 - 2.44 1.24 - - 1.95 1.13 - - -0.59 1.11 - - -2.06 -
0.83 1.06 -0.83 -0.78 -0.09 - -1.91 0.84 -0.52 -0.96 -0.15 -1.67 0.36 0.16 -0.02 0.49 -0.6 0.49 1.35 -2.77
-5.8 - - 0.35 -3.18 - -2.48 1.28 -0.86 0.99 1.7 - 0.68 0.06 1.72 0.56 0.33 0.45 -3.15 -4.26
0.39 - -1.49 0.07 - - -1.3 -0.44 -0.12 1.45 1.33 -0.77 -0.68 -0.8 1.77 1.46 - 0.32 -0.3 -
- - - - - - -2.78 -0.31 2.1 2.2 1.56 -3.05 -1.39 -0.48 2.39 -0.97 -3.02 - -4.74 -3.22
-0.96 0.12 0.74 -3.25 -0.67 -1.56 -0.53 -0.81 0.4 0.51 1.51 -1.17 -2.36 -2.09 1.5 0.55 0.93 -0.04 -2.5 -0.77
- -1.03 - - - - - 0.93 -0.45 2.31 -0.04 0.76 1.83 0.41 1.83 - - -0.74 -2.35 -
-0.28 -0.72 -0.79 1.46 0.37 -1.85 0.75 1.64 0.56 -0.56 -1.93 -2.17 0.52 -0.2 -1.71 -2.93 -0.13 0.07 0.59 -5.2
-2.96 -4.37 -2.81 -3.47 -3.13 -1.7 -4.69 0.45 1.27 1.3 1.25 1.13 0.32 -0.85 1.21 -4.7 1.74 -2.35 -1.14 -2.6
-2.62 -0.71 -2.57 -1.34 -0.74 -1.84 -0.17 0.82 -1.16 -2.16 -0.35 0.64 0.31 0.17 0.04 -2.96 - 0.95 0.86 2.28
-0.33 1.32 -1.48 - -1.47 - -1.96 -0.3 1.43 1.78 0.23 -0.11 -0.91 -1.19 0.49 1.31 0.1 -1.71 -1.56 -3.26
-2.17 - - 0.5 - -3.19 -0.65 -0.23 0.32 1.39 2.43 -3.06 1.04 -0.74 1.97 -2.02 -2.21 -2.58 -2.23 -
- - - - - - - -1.61 1.35 2.74 1.56 - - - 2.31 - 1.34 - - -
-1.26 -4.17 -2.17 -1.2 -0.75 -5.06 0.64 1.46 0.65 0.82 0.23 -0.89 0.65 0.48 -0.11 -1.12 -0.08 -0.92 -2.37 1.51
-1.41 -2.86 - -1.91 -1.39 -3.82 0.62 1.16 1.07 1.26 -0.94 -0.18 1.05 0.79 0.36 -1.36 0.14 -1.06 -4.77 1.0
1.3 0.05 1.42 0.66 0.62 -0.87 -2.25 0.58 -0.16 -0.77 -0.22 -0.68 -0.88 -0.9 -0.48 0.39 0.09 -0.27 -1.74 -2.32
-2.36 1.28 -4.05 0.63 1.35 -2.32 -2.22 0.96 -1.04 1.47 -2.6 0.74 1.67 0.3 -1.97 - - -0.92 -1.78 -1.84
- - - - - - -1.39 1.11 1.13 1.75 0.8 -1.19 2.16 1.95 - -0.49 - - -0.68 -4.68
-2.69 -2.89 - -0.35 -1.63 -1.75 0.45 1.16 0.36 -0.96 -0.54 -0.38 2.11 1.79 0.11 -0.96 -0.29 -0.51 -3.22 -1.23
- -3.11 - -2.58 -0.28 -1.2 -3.47 2.19 0.88 0.36 -0.35 2.42 0.85 0.92 -1.12 - - -1.44 -5.89 -
- - - - - - - 0.77 0.42 2.33 3.07 0.17 - - - - 1.25 - - -
- - - - - - - 4.32 - - - - - - - - - - - -
1.02 - - 2.69 0.5 - 1.05 0.84 - -1.41 0.38 -2.57 - - 0.27 - - 1.22 -0.2 -
0.48 -0.88 -0.55 1.18 1.07 0.16 -2.9 0.92 0.35 -0.34 -1.75 0.16 -1.75 -0.36 -2.07 0.52 0.46 -0.08 -0.46 -0.77
2.5 -1.76 0.29 0.78 2.0 -1.73 - 1.14 -1.14 -1.18 - -0.84 -0.16 -0.63 -1.5 - -0.32 -1.52 -3.42 -
- - - - - 0.16 - 2.16 0.33 - 1.33 - -0.64 0.41 1.84 0.69 0.08 - -0.94 0.93
-5.29 - - - -1.69 -0.25 - 1.52 -0.25 -1.41 -2.29 -0.57 3.49 1.01 -1.46 - -2.92 -3.12 - -
- -2.76 - -2.8 -0.85 0.32 - 1.54 -0.15 -0.94 -2.49 -0.59 3.39 0.7 -2.69 -3.48 -3.0 -2.11 - -
-1.53 -0.4 - - - -1.3 0.5 -0.06 0.96 0.78 1.08 -1.29 0.91 1.3 0.59 0.14 -0.07 -2.73 -1.54 0.63
- - - - - -2.73 - -0.22 0.86 2.41 1.77 -1.91 2.2 0.84 -0.82 -2.06 -3.93 -3.8 -0.48 -2.56
- - - - - - - -2.15 - 3.04 - - - - - - - - - 3.53
-1.32 0.29 - -2.88 -0.1 1.95 -2.82 0.49 -0.88 0.09 -2.51 1.56 -2.5 1.5 -2.58 -2.15 0.38 -2.28 -4.24 1.14
-3.17 -2.14 -3.86 -1.48 -1.54 - -4.71 2.11 -4.22 -3.37 -0.06 - 2.49 1.97 1.11 - -1.68 -4.11 0.47 -
-6.94 -4.44 - -2.93 -2.87 -6.7 -3.53 2.4 0.69 1.29 1.3 0.08 1.01 0.91 0.51 -2.33 -2.3 -0.11 -5.15 -4.96
-0.11 - - 0.75 - - 0.13 1.21 0.14 0.05 -0.98 -2.34 2.01 1.73 1.05 - -0.84 -1.13 -0.49 -
0.14 - 0.87 -0.64 -0.76 -2.01 0.25 -1.77 0.06 1.02 1.29 -2.66 -1.71 -1.5 1.16 1.26 -0.51 -0.09 -1.09 0.03
- - - - - - - 4.32 - - - - - - - - - - - -
2.03 -0.11 0.53 0.45 -0.79 0.67 -2.03 0.5 0.89 0.88 -1.82 -1.18 0.42 -0.2 -1.12 -0.37 -2.22 -2.5 -6.85 -3.6
-1.35 1.2 - 1.11 0.53 -1.48 -1.38 1.02 -0.67 0.84 -0.56 0.84 1.2 -0.09 -0.26 - - -1.88 -4.32 0.72
-0.49 0.54 -1.32 -0.72 -1.1 -0.28 -0.42 -1.23 1.28 0.51 1.52 -1.76 -1.94 -4.93 1.22 0.44 1.01 -1.89 -0.42 -1.65
-0.84 -0.14 -1.26 - -0.21 -2.55 -1.05 -0.74 0.8 1.58 1.38 -0.36 -1.85 -1.52 1.59 -0.19 0.91 -0.94 -0.18 -3.19
- - - - - - - -2.02 1.67 2.22 2.81 -3.17 - - 1.41 - 0.48 - -0.42 -
-4.36 -1.25 -3.03 - -2.6 -3.21 -4.52 1.89 -0.96 -1.57 -0.26 1.3 2.81 1.57 -0.07 - -4.09 -3.59 -2.55 -
-0.24 0.9 - - - - 0.55 1.08 - 0.92 1.25 - -0.65 -1.65 0.59 1.25 1.24 -0.44 0.6 -
-1.5 -3.24 -0.39 -2.39 -1.93 0.56 -0.86 0.03 0.41 1.13 1.04 0.77 -0.07 -0.55 1.0 -2.89 0.93 -1.51 -1.04 0.57
-1.8 -2.17 0.16 -1.77 -1.25 0.69 -3.4 -0.1 0.39 1.09 -0.44 1.97 -0.68 -0.77 -0.77 -2.48 1.93 -1.8 -4.25 -0.3
- - - - - - 2.88 1.74 1.16 - - - - 2.82 - - - - - -
-4.72 -0.15 -0.41 0.57 -0.99 -1.08 -0.59 0.58 0.58 -0.27 -2.91 -0.56 0.54 0.11 1.72 -0.41 -3.1 0.94 -2.21 0.8
- - - - - - - - - 4.32 - - - - - - - - - -
-5.12 -1.48 -2.6 -2.03 -0.33 2.3 - 1.78 0.37 -0.15 0.31 -0.9 -0.11 -1.16 -0.04 -2.53 0.29 0.94 -3.55 -1.57
-6.93 - -4.82 -4.6 -6.87 -1.48 - 2.72 1.4 0.61 1.3 0.01 0.48 -0.76 0.95 -2.62 0.23 -5.29 -8.46 -6.22
-2.02 -6.75 -0.58 -5.2 -3.9 -3.34 -6.64 0.59 1.23 1.66 1.14 0.64 0.47 -0.25 0.82 -5.03 1.97 -2.71 -9.32 -
1.64 - - - - - 2.01 1.31 - - - - - 2.18 - - - - - 2.54
- - - - - -1.28 - 0.65 2.44 2.54 - -3.26 1.35 1.65 - - -0.03 - - -27.12
-4.43 - -2.42 - - -4.14 -6.33 1.62 0.95 1.83 0.06 1.14 1.75 1.07 0.58 - -0.78 - -1.6 -
-4.61 -0.48 - 1.37 -0.53 1.19 -10.12 1.49 -0.88 - 0.14 -2.53 1.71 0.41 1.78 - -12.26 -1.69 -0.48 -
-2.01 - -1.05 - -0.95 - -1.74 0.12 1.96 1.73 2.07 1.69 -1.43 -2.55 - -0.35 -0.55 - -1.6 -1.34
-0.69 -0.53 -2.41 -0.11 -0.61 0.83 -1.11 0.76 -1.6 -3.44 0.81 -1.76 2.07 0.65 0.63 -1.9 -0.53 0.66 -0.58 -16.19
0.15 - - -0.92 - -2.1 -0.3 0.98 -0.16 -1.55 1.28 0.32 1.51 1.35 1.18 0.79 -5.24 -4.87 -0.42 -2.17
- - - - - - - 4.32 - - - - - - - - - - - -
1.26 - 1.24 1.36 0.74 - -0.03 0.83 -0.05 - 0.62 - 0.97 - -0.53 0.35 - - 0.23 -0.6
-3.58 - - -2.88 -0.59 - - -0.58 1.88 2.55 0.54 -0.18 -0.18 0.19 0.28 -0.93 1.0 -2.77 -1.24 -2.15
- - - - - - - 0.84 - 2.02 - - 3.04 - - - 2.57 - - -
-5.99 -3.11 -1.61 - -5.39 -6.51 -3.78 -0.41 1.06 1.42 -0.2 2.2 0.75 0.98 -0.47 -4.16 0.33 -3.77 0.87 -0.22
- - - - - - - 0.67 0.9 3.66 - - - 1.97 - - - - - -
0.1 -0.41 0.73 -0.06 -0.01 0.11 -3.47 -0.01 0.54 0.59 -0.35 0.52 -0.29 -0.29 -0.32 0.34 1.09 -0.09 -2.55 -1.84
-2.15 -3.3 -3.45 -2.44 -4.08 -1.62 -1.78 0.07 0.86 1.85 2.36 -1.41 0.59 -1.17 1.91 -4.06 -0.56 -3.43 -4.3 -2.53
-0.22 0.31 0.01 0.04 -0.07 -0.34 0.85 0.38 -0.24 -0.45 0.19 -0.25 -0.54 -0.45 0.28 0.26 -0.13 -0.36 0.05 -0.17
-4.26 -4.72 -2.77 -1.01 -3.01 -0.82 1.43 0.99 -1.46 -0.82 1.13 -0.24 1.54 1.62 0.91 -0.9 -0.67 -1.12 -3.3 -1.5
-3.25 -4.26 -0.31 -2.72 -2.64 -3.37 -0.49 0.1 0.97 1.56 0.71 2.01 0.29 -0.25 0.52 -3.75 1.04 -1.52 -3.65 -2.23
-1.24 -0.08 -3.1 -1.54 -1.18 -1.05 -1.35 -0.04 0.83 0.26 0.94 -2.03 1.08 0.72 0.88 0.74 -0.15 -1.75 -0.6 0.7
0.41 -1.45 -0.01 1.26 -1.47 -3.99 - 1.87 2.07 0.58 -2.96 0.33 0.05 -1.03 -2.99 -1.58 -0.59 -1.28 -0.52 -
0.6 0.06 0.82 0.44 -2.29 -2.47 - 1.88 2.06 0.67 -3.19 0.0 -0.06 -1.19 -3.79 -1.55 -0.85 -1.47 -0.66 -5.16

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.