Heatmap: Cluster_55 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
-0.33 -1.05 -0.86 -0.66 0.65 -0.25 0.17 -0.09 -0.75 -0.84 -0.36 -0.62 1.56 -0.52 0.91 1.56 -0.22 -2.89 0.9 - - -2.79 0.15 0.6 -1.04 0.17 0.71 1.03 0.42 0.1 -1.17 -1.98
0.23 0.23 0.12 0.79 2.07 0.19 0.97 0.64 1.24 -0.07 0.54 0.54 -0.65 -0.32 0.56 -2.23 0.05 -3.02 -1.06 0.57 -1.64 - -3.18 -3.22 -0.58 -1.08 -0.88 -1.58 -1.01 -0.14 -0.53 -0.17
0.25 -0.19 0.4 1.61 2.19 0.3 0.56 1.14 1.44 1.13 0.73 -1.22 -3.9 -2.1 -2.36 - -2.03 1.04 -1.7 - - - -3.08 -3.95 -1.24 0.02 0.11 0.76 -0.91 -2.44 -0.74 -1.81
- - - - 2.9 - - - - - -0.58 - - - - - - - - -1.5 - - - - 4.56 - - - - - - -
-5.12 - 3.4 - 4.38 - - - - - - - - - - - -0.71 - - - - - - - - - - - - - - -
-2.26 -0.89 0.17 -3.05 1.71 1.14 1.5 0.91 1.35 -0.71 -0.29 -0.77 -1.71 -2.96 0.12 -3.81 -2.0 0.09 -1.13 -0.52 - 0.15 -3.07 -2.19 1.74 -1.98 -0.12 1.14 -0.06 -0.57 -0.83 -0.26
-0.62 -0.64 - 0.06 1.23 -2.56 -0.02 -2.86 -0.96 -0.54 0.24 -1.58 -0.02 -2.27 -0.85 -0.71 -0.21 0.53 3.21 - -0.16 - 1.14 -0.53 - -1.34 0.35 - 0.3 0.12 -0.36 -0.25
-1.02 0.01 -1.19 -1.32 3.93 0.73 - -1.11 - 1.2 0.61 - - 0.19 - - - - - - - - -0.93 0.18 - - 0.6 - - - -0.89 1.87
0.83 - - - 4.26 - 0.37 0.14 - - 2.5 - - 1.62 - - - - - - - - - - - - - - - - - -
-0.49 -0.79 0.43 -0.02 0.4 0.17 0.22 0.58 0.04 -0.22 -0.57 -0.77 0.26 -0.34 0.81 0.42 -0.24 -0.42 0.49 -0.78 -0.65 -2.06 0.08 0.23 0.59 0.12 0.36 0.34 0.01 -0.08 -0.87 -0.48
-1.18 -0.1 1.62 -0.01 1.33 0.96 -1.27 -1.47 - -0.4 -0.33 -1.19 2.92 -0.76 -0.53 -2.32 -2.62 -0.13 0.69 - - - -0.49 - 0.37 - -1.47 1.87 -1.15 0.18 - -
0.07 1.49 -0.15 0.18 2.51 -0.12 0.55 0.57 -1.34 -0.32 -1.91 0.36 1.24 -0.08 -0.62 -2.48 -2.0 - 1.54 - - - -2.66 -3.78 -0.78 1.6 -0.47 0.34 -3.71 -1.12 -2.75 -
-0.91 - - -1.24 3.22 -1.12 -0.34 -0.26 -0.56 1.68 -1.34 -2.29 -1.95 -1.33 - - 0.28 0.21 1.97 - - - - -1.18 -0.12 -1.06 1.27 1.06 0.17 -0.53 - -
0.38 -0.86 2.0 0.4 2.93 0.6 0.94 -2.52 -0.53 0.26 -0.07 0.64 -0.03 - - - 1.38 - - - - - - - - -1.22 -0.01 0.01 -0.64 -1.17 -0.21 0.31
0.15 -0.03 -0.18 -0.22 1.02 -0.33 -0.22 -0.12 0.12 -0.12 0.33 0.04 0.01 -0.67 -0.61 0.52 -0.58 -0.68 0.27 -1.28 -1.66 -0.09 0.77 1.11 0.98 -0.53 -1.0 -0.58 -0.15 0.07 -0.11 -0.33
-2.28 0.98 1.27 0.91 3.1 -11.2 -0.46 -0.16 -1.35 0.26 1.56 -3.06 0.66 -0.43 - -0.77 1.33 - 0.27 - - - - 0.34 - -0.26 - - 0.96 -14.41 - -10.03
0.42 0.94 2.28 - 2.66 1.25 0.78 0.48 - -18.58 -1.11 - 2.62 - -23.19 - - - 1.64 - - - - - - -23.12 0.96 -10.44 -1.23 - - -
- - - -1.46 2.93 1.26 -1.5 - - -0.65 -0.32 - - 1.25 - -0.06 - -0.71 3.72 - - - - -0.36 - - 0.92 - - - - -
-29.01 - -5.45 - 2.58 0.53 -7.38 0.47 -14.89 - -2.86 - -0.06 -3.3 0.72 -2.76 0.74 -0.69 0.81 - -0.64 - 0.25 0.91 2.46 -2.4 -0.99 -1.34 0.29 0.09 0.42 1.14
-0.7 0.01 0.55 1.56 1.77 0.84 1.59 0.43 0.42 -0.52 0.31 -0.97 -3.38 -3.39 -0.65 -3.13 -2.22 - -2.7 -1.03 - -2.68 -2.69 -1.95 1.8 0.15 1.46 0.6 -1.11 -0.81 -1.97 -3.35
-1.73 - - -1.44 2.6 0.43 -1.7 -1.37 1.57 -0.13 -1.45 -0.54 0.44 -1.65 -0.12 0.06 -0.44 0.74 0.98 - - - -0.08 0.08 - -0.35 0.42 1.03 -0.95 0.56 0.7 -1.01
-0.28 1.11 0.16 0.32 1.58 -0.57 -0.05 -0.79 0.2 0.19 0.12 0.57 - -6.09 - -2.7 -0.23 0.11 1.77 - - - -0.92 -1.42 -1.55 1.92 0.6 0.48 0.02 0.27 -1.03 -1.22
1.13 0.01 -0.25 1.78 2.55 -0.18 0.71 1.63 1.27 1.17 1.3 0.79 - -0.91 0.7 - - - - - 0.47 - - -0.61 - - - - - - - -
-2.07 -1.22 -2.46 0.91 2.29 -1.98 - -0.42 -0.35 -1.37 -2.2 -0.21 -0.9 - -0.65 - 0.36 0.37 1.41 - - - 1.45 -0.01 1.45 0.97 -0.62 0.19 -0.12 -0.03 0.75 -0.12
-2.76 - -1.65 -0.75 2.44 -0.16 0.18 - -1.62 -0.63 - -1.46 -0.05 0.32 2.86 0.64 -1.19 - 2.95 - - - - -1.11 - 0.26 - - -0.19 - -1.23 -
-0.8 -0.88 -0.3 -0.85 1.3 -1.22 -0.73 0.31 0.17 0.17 -0.64 -0.8 -1.06 -2.96 -2.45 0.13 -0.1 0.49 0.59 - - -0.04 1.69 1.14 1.58 -1.25 -1.05 -2.58 0.22 0.52 0.47 0.2
-0.93 - -1.54 0.37 2.53 1.66 1.5 1.74 1.41 0.71 1.15 0.69 - -1.52 -0.16 - 0.8 - - - - - -1.66 - - -0.2 0.67 - - -0.86 -1.83 -
-1.71 -0.64 0.02 -3.37 1.68 0.35 0.44 0.48 -1.78 -0.86 0.12 -0.78 -1.23 -1.59 1.67 -0.52 -1.14 -0.79 0.45 - 1.31 0.08 -1.36 -1.69 -0.73 -0.38 1.64 1.94 -3.85 -2.12 -1.63 -
0.52 0.22 -1.0 -0.29 1.46 0.23 -0.11 -0.19 0.61 0.36 1.21 1.08 -1.54 -1.35 -0.98 -1.97 0.49 -1.81 -0.19 - - - -0.75 -0.86 -2.97 1.34 0.44 0.56 0.25 -0.06 0.47 -0.18
-0.31 -2.58 - 0.08 2.27 -0.81 - -2.36 - 0.16 -0.92 - -1.12 -2.14 -3.03 -1.98 - - 3.67 - - - - -2.2 - -0.01 1.71 2.1 - -2.28 - -
0.18 -0.34 -1.71 -0.88 0.93 -0.33 -1.33 0.37 0.38 0.41 1.49 0.81 0.07 -0.94 0.3 0.19 -0.57 -3.08 0.24 -3.61 -0.34 -2.11 -0.4 -0.8 -0.72 1.22 -3.12 - -0.1 -0.38 0.92 1.4
-1.53 - - - 4.49 - - 2.17 - -0.96 0.27 - - - -1.26 - - 0.04 0.54 - - - - - - - - - - - - -
- - - - 2.92 -0.29 2.35 - 0.26 -0.75 1.91 - -0.38 - -1.05 - 0.55 - 2.23 - - - - - - 1.76 - - -0.45 -0.48 -0.5 -
-3.13 - - - 4.08 1.76 - 1.96 -1.72 - - 0.26 - - - - - - - - - - -0.55 -3.23 1.98 - - - 0.15 -1.59 - -
-0.45 -0.47 0.88 -0.58 1.25 -0.09 0.66 0.37 -2.11 0.48 -0.84 -1.77 -1.24 0.48 1.72 -1.04 -1.76 -4.1 1.23 0.12 -0.16 - -0.74 -0.36 -0.13 0.28 0.78 1.29 -1.89 -1.09 -1.75 -1.46
-0.65 -1.7 -0.58 -0.53 1.43 -0.02 -0.64 1.0 -0.47 0.62 0.22 1.42 -1.95 - - -1.96 -0.44 - 2.32 -0.66 - - -1.45 -0.54 0.33 -0.81 -1.67 2.31 -0.82 -0.3 -1.31 -1.22
-0.34 -1.01 -2.2 -0.07 1.54 -0.66 0.04 0.71 -2.05 0.78 0.32 0.13 0.38 -0.8 -0.05 -0.4 -3.93 - -0.34 - - -2.26 0.68 1.57 2.1 -1.7 0.12 1.0 -0.32 -1.57 -0.74 -1.39
-1.5 -0.48 -4.02 -2.41 1.45 -3.02 -2.79 -2.07 -1.89 -2.75 -2.31 -0.65 -3.45 -1.87 -4.36 -0.86 -0.4 0.02 3.47 - 0.64 - -0.42 -3.12 -1.59 1.34 0.86 1.76 -1.17 -0.59 -1.41 -1.39
-1.99 - - - 3.39 - -0.61 - - -0.72 - - -0.31 1.44 -1.17 -0.16 - 0.2 2.33 - - - -0.5 - - 0.54 1.75 1.77 - - - -
-0.71 -0.59 1.13 -2.51 1.63 1.01 0.31 0.36 - -2.08 0.92 - - -0.85 -0.79 -1.3 -1.5 0.71 3.57 - - - - - - -2.14 0.34 -0.1 -4.85 -0.82 -2.5 -
-0.16 -1.18 2.08 0.43 3.23 - - - - 0.08 - - - - -1.94 - 2.78 -1.1 0.71 - - - -0.25 -0.24 - 0.79 - - 0.28 -1.28 -1.31 -
-2.11 -0.12 - -1.49 2.71 -0.92 1.51 - - 0.53 - 0.87 - -0.78 - 0.26 - 1.23 - - - - 0.95 -1.11 2.51 - 0.25 1.26 - 0.57 - -
0.04 -0.05 0.02 0.28 1.56 -0.67 -0.35 -0.03 -0.67 1.02 -0.19 0.3 2.74 -0.66 -4.37 0.28 -2.74 - -0.04 - - - -0.64 -0.74 -1.6 0.41 0.8 0.58 -0.92 -2.71 -0.92 -0.62
- - - - 5.0 - - - - - - - - - - - - - - - - - - - - - - - - - - -
- 1.35 - 1.38 3.44 1.78 0.98 - 2.4 0.79 1.24 - - - -0.19 - - - - - -1.43 - - - - - - - - - - -
-2.93 - - - 2.37 - - -1.27 - - - - 0.54 1.93 2.07 1.75 -0.89 0.91 0.89 - - - 0.4 0.39 - 0.27 1.24 - -0.99 -0.37 0.01 -0.47
-3.24 - - -2.65 1.76 0.43 1.63 0.84 -2.32 -0.31 -1.97 0.08 -1.8 - 0.39 -1.78 -0.26 -0.85 -1.95 - 1.41 1.93 - 0.05 0.13 - 0.61 1.91 -0.62 -0.12 -0.63 -2.56
-3.0 -0.93 -0.58 0.16 1.69 -1.0 -1.64 -1.38 -0.61 -1.35 -1.36 -3.18 -0.59 -3.28 -0.96 -2.89 -1.37 1.23 3.74 - -0.14 -0.5 -1.0 -0.09 -1.0 - 0.78 - -1.13 -2.03 - -3.12
-0.37 -0.25 0.07 -0.4 1.17 0.13 0.25 -0.28 0.08 -0.23 -1.51 -0.21 -0.79 -2.23 -1.52 -1.2 0.12 -2.94 2.23 - -1.57 - 0.04 0.53 0.71 0.16 0.91 1.02 -0.48 0.36 -1.27 -0.42
-1.31 -1.0 - -0.18 0.93 0.05 -0.74 -0.51 -0.07 -1.82 0.3 -1.51 -1.96 -2.62 -1.17 -1.33 0.88 -1.15 3.53 -2.34 - -0.26 0.0 0.37 - -1.29 1.1 - 0.02 -0.52 -2.37 -1.86
-1.06 -1.84 -0.78 -0.59 -0.11 -0.08 0.66 0.93 -0.81 0.06 0.08 -1.27 0.93 -0.17 0.89 1.26 -0.51 -2.58 0.8 - -0.07 - 0.67 1.07 -1.63 0.61 0.9 0.26 -0.3 -0.24 -1.18 -1.93
-0.67 -2.92 1.39 0.99 2.86 0.83 -0.5 -0.38 2.43 1.94 -0.42 0.58 -1.56 0.1 -3.4 - -2.58 - -2.72 - - - 0.16 -1.78 - -0.59 - - -1.82 -2.7 -2.72 -2.78
-0.75 -0.15 -0.71 -0.37 1.03 -0.25 -1.41 -0.44 1.21 0.23 1.08 0.81 -0.14 0.0 -0.35 0.05 -0.52 -1.04 0.45 -4.39 -3.25 0.3 0.24 0.08 -0.09 0.94 0.52 -0.76 -0.1 -0.06 -0.71 -0.98
-0.02 0.4 0.52 -0.93 1.79 -1.45 0.59 0.51 0.47 0.84 1.08 -0.48 0.1 -0.2 0.45 -0.19 -1.77 -1.93 1.09 - -0.84 - -2.45 - 1.2 0.82 0.17 0.58 -2.05 -3.49 -3.33 -1.95
-2.82 - -1.72 -1.81 3.69 - - - 0.31 - - - -1.1 - -2.02 0.53 - - 2.98 - - - - - - 1.81 - 0.93 -1.4 -1.26 -0.3 -
- 0.44 - - 2.6 -0.34 - - - - 0.43 - - 0.65 1.22 -0.21 - - 1.93 - - - -0.23 -0.43 3.41 0.71 - - - - - -
- -1.1 - - 3.22 0.71 1.24 2.09 - -1.2 1.43 0.48 -0.77 - -1.67 - - - 0.08 - - - - - - - 2.32 - -1.06 - 0.63 -1.03
-0.4 -0.84 -1.3 -2.5 0.98 -0.16 -2.39 -2.05 -2.46 -1.63 -0.44 -0.33 0.67 0.66 -0.32 0.96 0.88 0.7 1.36 - - - 1.27 0.91 - -2.11 -1.81 0.59 -0.16 0.33 1.24 0.98
-0.49 -0.88 -3.2 -0.64 1.58 1.06 0.74 0.85 0.56 0.49 -0.6 -0.39 -2.83 -4.03 -0.03 -1.55 -1.43 -3.5 -2.97 -0.31 1.6 -2.41 -1.43 -1.97 -1.47 0.28 1.72 1.67 -0.85 -0.96 -0.47 -0.89
-0.93 -1.6 -1.47 0.51 1.6 -0.31 0.23 0.08 0.24 -1.37 -1.99 -0.59 1.72 -0.8 0.81 1.64 -0.56 0.47 -2.59 - - -1.85 1.48 0.65 -1.35 -1.35 -1.19 0.41 0.05 -0.36 -0.96 -1.61
0.04 - - - 3.79 - 0.54 - - 0.35 - 0.61 0.63 0.82 -0.07 0.64 - 1.67 - - - - - 1.96 - - - - - - - -
-0.25 1.49 -1.36 0.12 2.49 -1.92 0.44 - 0.08 -0.08 - - 2.5 0.43 - 0.17 -2.02 - -1.02 - - - 0.67 -0.42 - 1.42 -0.76 1.25 -1.04 - -2.02 -
0.58 - - 0.41 2.75 - 2.93 0.59 - - 0.5 -10.17 -1.14 - -0.44 - - -1.57 - - - 2.16 - - - 1.01 - 1.71 - - - -0.67
- - - - 5.0 - - - - - - - - - - - - - - - - - - - - - - - - - - -
-1.02 - - - 3.55 - - - 3.08 - - 0.18 1.39 1.89 -0.63 -0.8 - - 0.45 -7.02 - - -1.23 - - - - - -1.26 - - -1.32
-0.77 - - - 3.09 - - -0.76 - - - -1.43 - -1.58 -1.06 - -1.34 - 3.16 - - - -1.34 -1.43 - 1.71 1.92 0.88 -0.46 -1.45 -1.45 -0.52
0.49 1.02 1.46 1.02 1.64 0.57 0.51 -0.13 0.13 -0.2 0.29 0.58 -0.48 -0.16 0.12 -1.12 -0.64 -0.99 1.04 - -1.86 - -0.98 -2.18 - -0.97 -0.07 -0.91 -0.15 -0.2 -1.24 -0.72
1.2 -1.38 - - 4.8 - - - - - - - - - 0.57 - - - - - - - - - - - - - - - - -
-0.15 0.43 -0.94 0.07 0.58 -0.05 0.57 0.34 -0.31 -0.65 0.16 -0.37 -0.36 -1.49 -1.39 1.03 -0.35 0.23 2.57 - - - 0.42 0.46 -2.16 -1.59 -1.81 -1.99 0.6 -0.02 -0.11 -0.11
- 0.09 - 2.65 3.68 - - 1.38 - -4.14 0.75 1.4 - 1.5 -0.39 0.38 - - - - - - - - - - - - - - - -
- - 2.58 - 3.65 - - - - - - 0.49 - - - - -0.49 - 0.51 - - - - - 3.18 - - - - - -0.32 -
0.13 0.04 0.08 0.45 1.96 1.05 0.36 1.22 1.0 0.84 0.68 0.68 -2.99 -0.6 1.25 -2.63 -2.46 -3.1 -2.79 - -0.12 -15.43 -3.12 -2.83 1.05 0.29 -0.58 0.6 -3.01 -2.39 -4.18 -3.7

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.