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Heatmap: Cluster_129 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
0.35 0.18 -0.13 -0.29 -0.18 -0.33 -0.34 0.15 0.44 0.57 0.71 0.97 -0.62 -1.44 -0.65 -0.2 -0.65 -1.0 0.36 -1.81 0.32 -0.28 -0.3 -0.01 0.23 0.15 0.04 0.01 0.43 0.52 -0.27 -0.31
0.88 0.72 0.31 0.26 0.18 0.15 0.08 0.06 0.16 0.34 0.4 0.58 -1.8 -0.92 -1.59 -0.67 0.1 -0.06 -0.2 -0.4 0.58 -2.25 -0.22 -0.46 0.18 -0.93 -0.76 -0.51 0.07 0.13 0.36 0.49
0.46 1.01 1.03 0.72 0.37 0.31 0.51 0.53 0.56 0.9 0.85 1.11 -1.69 -2.87 -3.42 -1.12 0.16 -0.04 0.35 -3.87 0.43 - -1.55 -2.21 -0.75 -0.73 -0.26 -0.11 0.03 -0.07 -0.6 -1.81
0.79 0.17 -0.44 -0.35 -0.52 -0.56 -0.4 0.04 0.47 0.52 0.74 0.8 -0.81 -1.43 -1.18 -0.07 -1.29 -2.97 0.14 0.42 0.01 -5.92 -0.94 -0.63 0.47 1.57 0.44 0.03 -0.67 -0.49 0.15 0.62
1.44 0.57 -0.42 -0.27 -0.94 -0.47 -0.8 -0.39 -0.17 0.25 0.8 1.45 -2.91 -3.02 -1.27 -0.66 -0.72 -1.14 0.5 - -0.1 -0.51 -1.74 -2.45 0.47 1.04 0.9 0.66 0.24 0.48 -0.62 0.1
0.39 0.21 -0.05 -0.1 -0.02 -0.18 -0.02 0.09 0.17 0.43 0.28 0.59 -0.37 -0.92 -1.35 -0.16 -0.38 -0.17 0.33 0.52 1.36 0.2 -0.22 -0.31 0.66 0.05 -1.58 -1.29 -0.13 -0.05 -1.0 -1.05
0.69 0.38 0.26 0.37 -2.23 -0.34 -0.36 -0.9 -0.15 0.45 0.18 0.73 0.1 0.08 -0.31 0.57 -0.06 0.14 0.24 1.42 -2.25 -0.05 0.23 0.28 -1.07 -0.45 -1.33 0.48 -0.54 -0.51 -0.98 -1.25
1.11 1.03 0.76 0.39 0.1 -0.07 -0.05 0.01 0.22 0.28 0.49 0.65 -0.21 -0.41 -0.8 -0.23 -0.22 -0.09 0.36 -5.36 -0.03 -4.05 -0.93 -0.87 -1.02 0.16 0.06 0.14 -0.1 -0.17 -0.32 -0.28
3.72 1.98 -10.47 - - - - - - - - -2.55 -4.68 - -3.87 -4.74 -1.1 -2.18 0.82 -7.38 2.17 -7.88 -1.57 -1.83 -0.23 - -0.26 -0.73 0.26 0.02 0.62 -0.08
-0.22 -0.34 -0.25 -0.27 -0.17 0.18 0.25 0.5 0.25 0.3 0.17 0.14 -0.6 0.04 -1.28 -0.23 -0.58 -0.71 -0.21 0.33 1.43 -0.98 -0.78 -0.61 0.89 -0.53 -0.54 -0.61 -0.13 -0.06 0.6 0.4
0.93 1.02 0.92 0.53 0.29 0.07 0.01 0.02 0.24 0.45 0.68 0.99 -0.71 -0.21 -0.7 -0.54 -0.46 -0.67 -0.66 -1.59 0.27 -2.33 -0.62 -1.02 -1.74 0.31 -0.44 -0.22 -0.07 -0.1 -0.25 -0.31
0.87 -0.03 -0.59 -0.46 -0.52 -0.58 -0.54 -0.08 0.13 0.22 0.56 0.95 -0.93 -0.46 -0.98 -0.63 -0.45 -0.25 -0.08 -1.87 0.41 -1.61 -0.74 -0.9 0.48 0.99 0.26 0.2 0.29 0.28 0.45 0.7
0.52 0.45 0.29 0.26 0.31 0.04 0.14 0.34 0.52 0.44 0.48 0.7 -4.22 -1.53 -2.07 -1.14 -0.03 -0.79 0.38 -1.19 0.44 -1.97 -1.27 -1.38 0.86 0.48 0.15 0.24 0.15 0.16 -0.07 -0.23
2.13 0.07 -0.84 -0.76 -1.06 -1.08 -0.85 -0.84 -0.83 -0.1 0.73 1.76 -0.97 -1.26 -1.16 -0.89 -1.38 -0.68 0.63 1.17 0.92 0.02 -0.7 -1.0 -1.09 -0.99 -1.81 -1.87 0.31 0.34 0.2 -0.14
0.45 0.07 -0.06 0.13 0.06 0.08 0.16 0.02 0.58 0.65 0.38 0.85 -4.15 -1.87 -3.08 -3.03 0.37 -0.2 -1.64 0.5 1.41 -1.83 -0.97 -1.61 0.89 -0.13 -0.25 -0.45 0.18 -0.03 0.27 0.31
0.44 0.24 0.12 0.14 0.13 0.23 0.36 0.41 0.51 0.4 0.49 0.5 -3.15 -1.7 -2.84 -2.43 -0.03 -0.09 -1.12 0.37 1.08 -0.09 -0.93 -1.08 0.14 0.31 0.39 0.42 -0.13 -0.25 -0.32 -0.29
0.79 0.58 0.36 0.36 0.33 0.17 0.38 0.88 0.82 0.94 0.86 1.06 -4.24 -3.05 -5.55 -2.92 -0.29 -0.78 -0.6 -1.21 0.62 -2.38 -0.84 -1.49 1.16 -0.44 -0.25 -0.19 0.05 -0.09 -0.88 -1.24
0.65 0.41 0.21 0.14 -0.09 -0.13 -0.24 -0.18 0.01 0.1 0.3 0.63 -6.03 -2.62 -5.49 -3.05 -0.11 -0.15 -1.54 0.78 2.03 -2.71 -0.61 -0.95 1.56 -0.07 -0.34 -0.28 -0.31 -0.49 -0.24 -0.15
0.6 0.47 0.29 0.07 0.02 0.12 0.82 0.39 0.6 0.58 0.62 0.59 -2.59 -0.73 -0.6 -1.42 0.1 -0.51 -0.73 -0.61 0.53 -0.44 -1.63 -1.46 0.33 0.62 -0.35 -0.09 0.05 0.26 -0.86 -0.78
1.66 0.54 0.17 -0.33 -0.76 -1.11 -1.19 -0.86 -0.34 0.34 0.77 1.28 0.36 -2.05 -3.96 -0.06 -0.38 0.39 -0.27 -0.79 1.01 -2.43 -0.02 0.07 0.44 -0.06 -1.37 -1.3 -0.05 0.18 -0.09 -0.25
0.39 -0.01 -0.11 0.27 0.02 -0.01 0.19 -0.14 0.33 0.32 0.38 0.55 -0.03 -0.64 -0.91 -0.0 -0.43 -0.82 -0.05 0.0 -1.32 0.5 0.04 -0.32 1.09 0.57 -0.34 -0.18 -0.32 -0.25 -0.62 -0.78
0.77 0.01 -0.18 -0.29 -0.18 -0.11 0.03 0.44 0.57 0.63 0.74 0.57 -2.05 -1.47 -2.17 -0.47 -0.33 -0.22 0.64 -0.43 -0.13 -0.63 -0.16 -0.16 0.05 0.72 -0.29 -0.29 0.24 0.18 -0.19 -0.23
0.83 1.02 0.75 0.62 0.59 0.33 0.33 0.17 0.3 0.55 0.47 0.72 -0.92 -0.61 -1.92 -0.65 -0.76 -0.5 -0.04 -0.94 0.27 -1.91 -0.54 -0.99 -0.0 -0.43 -0.69 -0.58 -0.07 0.0 -0.41 -0.26
0.26 0.03 0.16 0.05 0.04 0.27 0.08 0.0 0.14 0.1 0.09 0.12 -0.82 -0.37 -0.65 -0.81 0.19 0.36 -0.29 0.05 0.98 -0.48 -0.16 -0.36 0.89 -0.93 -0.3 0.05 0.13 0.17 -0.54 -0.53
0.92 0.65 0.24 -0.1 -0.54 -0.66 -0.45 0.09 0.34 0.6 0.74 1.05 -8.33 -3.98 -11.12 -2.21 0.17 -0.39 -0.16 -0.32 0.48 -3.54 -0.54 -0.72 0.99 0.02 -1.31 -1.08 0.78 0.7 0.62 0.48
0.73 0.15 -0.02 0.01 0.01 -0.12 -0.01 0.23 0.56 0.79 0.78 0.96 -2.74 -3.12 -3.34 -1.64 -0.21 -0.51 -0.81 -0.07 0.85 -0.78 -0.71 -0.97 0.58 0.8 -0.28 -0.18 0.13 0.09 -0.15 0.03
0.56 -0.24 -0.28 0.14 -0.24 -0.04 -0.17 0.2 0.24 0.42 0.2 0.57 -2.35 -1.85 -2.85 -1.4 0.11 -1.3 0.73 -2.59 0.58 - -0.25 -0.36 0.25 0.64 0.91 0.75 0.05 0.32 0.18 0.68
3.62 2.71 - -0.01 - - - - - - - 2.9 - - - - - - -0.26 - - - - - - - - 1.94 - - - -
2.0 1.27 -0.65 -0.84 -2.09 -2.28 -2.3 -1.92 -1.51 -1.58 -0.24 1.91 -0.45 -0.83 0.61 0.34 -0.4 -0.93 0.2 2.61 -0.28 -2.42 -1.38 -1.79 -3.26 -2.27 -1.74 -1.5 -0.41 -0.38 -0.61 -0.36
1.12 0.7 0.02 -0.49 -2.09 -0.55 -1.5 0.03 -0.32 -0.47 1.19 1.43 -4.58 -1.75 0.24 -2.86 -0.92 -0.81 1.23 1.89 0.28 0.17 -2.0 -4.0 0.77 -0.28 0.01 0.65 -1.95 -1.89 -1.43 -2.27
1.43 1.02 0.43 -0.13 -0.57 -1.34 -1.85 -1.67 -1.57 -1.02 -0.09 0.95 -0.37 -0.72 -2.68 0.11 -0.07 -0.72 0.03 0.58 1.21 -0.82 -0.2 -0.15 0.79 0.27 -0.18 0.03 -0.01 0.01 -0.41 -0.53
2.07 -0.98 -0.75 -1.58 -1.4 -2.49 -1.16 -2.03 -1.1 0.21 1.32 1.85 0.32 -0.37 -1.54 -0.64 - - -0.76 1.31 1.18 -1.52 -5.59 -2.02 -0.23 2.63 -1.0 -3.47 -3.48 -3.13 -1.1 -3.0
1.12 0.32 0.14 -0.22 -0.25 -0.19 0.38 0.64 0.75 0.99 0.96 1.22 -5.02 -3.5 -2.64 -3.59 -0.35 -0.33 -1.03 -1.65 0.92 -5.16 -1.07 -1.76 1.29 -0.07 -0.33 -0.07 0.36 0.19 -0.71 -1.09
1.97 -0.25 1.14 -1.67 -1.04 - - - -0.75 -1.59 1.71 2.22 -0.62 -2.32 -3.46 -2.58 - - -3.11 2.59 - - - - - 2.71 0.14 -1.02 - - - -
1.42 0.65 -0.12 0.24 0.66 -0.09 -0.24 0.04 0.18 0.26 0.66 0.85 -5.27 -2.46 -1.31 -2.61 -0.8 -3.41 -0.19 -1.3 -0.05 -0.84 -1.83 -0.31 1.31 0.04 0.1 0.39 0.53 0.42 -0.1 -0.76
0.37 -0.28 -0.35 -0.58 -0.94 -0.78 -0.55 -0.05 -0.06 0.16 0.44 0.55 -0.71 -0.72 -0.89 -0.57 -0.88 0.09 -0.14 0.5 1.3 0.77 -0.4 -0.12 -0.24 1.1 -0.19 -0.48 -0.11 -0.13 -0.06 0.29
0.5 0.35 0.38 -0.04 -0.69 -0.8 -1.17 -0.4 -0.14 0.2 0.65 1.21 -0.46 -1.99 -2.55 -0.16 -0.15 -1.7 0.21 -0.73 0.06 -4.77 0.41 0.57 0.82 0.79 -0.13 -0.2 0.52 0.38 -0.03 -0.33
-0.06 0.27 0.27 0.32 -0.08 -0.25 -0.03 0.14 0.15 0.27 0.59 0.79 -0.55 -1.97 -2.53 -1.22 0.06 -1.37 -0.04 -0.34 0.37 -3.35 0.19 0.2 1.35 0.36 0.57 0.66 0.14 0.07 -1.74 -2.25
1.28 0.44 -0.07 -0.68 -0.74 -0.45 -0.43 0.23 0.42 0.41 0.88 1.39 -4.0 -4.36 -3.52 -2.66 -0.27 0.11 -1.06 -0.26 0.93 -2.03 -0.74 -1.5 1.41 -0.84 0.24 0.1 0.19 0.23 -0.2 -0.14
1.23 1.21 0.43 -0.06 -0.76 -1.72 -1.52 -1.72 -1.03 -0.4 0.21 0.81 -9.22 -5.9 -8.99 -4.22 0.32 1.27 0.33 0.41 1.45 - -0.88 -1.79 1.38 -0.79 -1.04 -0.8 0.96 0.79 -0.33 -0.44
-0.37 -0.52 -0.03 0.08 0.03 -0.01 0.25 0.45 0.43 0.51 0.24 0.0 -0.5 -1.74 -2.95 -0.59 0.04 -0.86 -0.42 0.48 1.5 -1.69 -0.13 0.04 1.23 0.18 -0.76 -0.5 0.16 0.08 -0.49 -0.51
1.07 0.56 0.3 0.25 0.4 0.46 0.47 0.35 0.71 0.83 0.7 0.87 -1.57 -1.32 -0.81 -0.85 -0.16 -0.38 0.14 -2.72 -0.36 -3.85 -0.38 -0.32 -1.78 -1.02 -0.8 -0.8 0.14 0.18 0.31 0.25
1.06 0.8 0.24 -0.12 -0.3 -0.62 -0.71 -0.64 -0.33 -0.13 0.04 0.48 -3.02 -1.5 -1.95 -1.25 -0.1 -0.21 -0.09 1.2 1.67 -1.2 -0.53 -0.54 0.83 -0.12 -0.6 -0.48 0.03 -0.01 0.04 -0.18
0.18 0.36 0.31 0.3 0.39 0.56 0.2 -0.34 -0.3 -0.31 -0.34 -0.28 -1.71 -0.28 0.01 -1.09 0.49 0.6 0.07 0.46 0.91 -0.01 -0.25 -0.83 0.38 -1.8 -0.29 -0.12 0.0 0.0 -0.44 -0.21
-0.0 -0.2 -0.1 0.06 -0.03 -0.05 -0.27 0.0 0.23 0.22 0.18 -0.06 0.58 -0.44 -1.32 0.5 -0.16 -0.68 0.68 0.47 0.73 0.45 -0.59 -0.21 0.19 0.8 -0.89 -0.91 -0.2 -0.28 -0.61 -0.88
0.81 0.68 0.27 0.12 -0.05 0.32 -0.21 0.08 0.3 0.16 0.11 0.56 -2.02 -1.44 -2.43 -1.68 0.42 -0.14 -0.24 0.11 1.27 -0.66 -0.34 -0.84 0.18 -0.43 0.27 0.28 0.12 0.07 -0.72 -0.75
2.22 0.61 -0.37 -0.61 -0.99 -1.7 -1.75 -1.93 -1.3 0.02 -1.15 0.68 -0.25 -2.79 -2.81 0.87 -0.55 -0.02 -0.95 -0.73 -0.7 -1.89 -0.85 -1.47 3.07 -1.45 - -0.66 0.02 0.16 -2.42 -1.93
0.84 0.87 0.09 -0.4 -0.6 -0.62 -0.55 -0.46 -0.42 0.01 0.32 1.08 -0.47 -0.6 -1.76 -0.02 -0.17 -1.19 -0.29 -0.88 0.77 -2.15 -0.43 -0.25 1.71 -0.08 0.36 0.74 0.08 0.02 -1.5 -1.91
-0.28 -0.58 0.15 -0.18 -0.25 -0.02 0.22 0.46 0.39 0.14 0.19 -0.26 -2.22 -1.8 -0.55 -1.76 0.54 0.33 -0.57 -0.57 0.39 0.5 -0.36 -0.54 -0.06 -0.16 0.76 0.88 0.53 0.47 0.05 -0.36
0.2 0.1 -0.22 0.11 -0.24 0.05 -0.09 0.01 -0.25 -0.14 -0.27 0.2 -2.48 -1.75 -2.99 -1.58 0.05 0.02 -0.74 0.79 2.07 -2.4 -0.56 -1.04 1.72 -0.97 -0.46 -0.13 0.2 0.23 -0.1 -0.45
0.74 0.28 -0.05 0.19 -0.31 -0.45 0.11 0.02 0.43 0.48 0.69 0.79 0.04 -0.56 -1.17 0.17 -0.47 -2.09 -0.17 -0.24 -0.26 -1.78 -0.5 -0.18 0.97 0.44 -0.08 0.08 -0.07 0.03 -0.46 -0.75
0.54 0.58 0.54 0.18 -0.01 0.1 0.05 0.12 0.38 0.12 0.29 0.28 -5.59 -3.25 -4.22 -4.74 0.39 0.82 -1.7 0.53 1.58 -0.07 -1.13 -2.36 1.05 -1.88 0.41 0.37 -0.03 -0.29 -0.89 -0.94
0.51 0.07 -0.51 -0.4 -0.43 -0.75 -1.16 -0.6 -0.23 -0.15 0.16 0.74 -0.11 0.38 -1.13 0.2 -0.63 -0.88 0.66 0.8 0.9 -3.21 -0.1 0.0 0.53 1.16 -0.18 -0.29 0.0 0.08 -0.77 -0.34
1.81 1.63 1.04 0.51 -0.09 -0.87 -2.48 -2.64 -3.14 -2.03 -0.75 1.13 -3.61 -4.26 -6.69 -1.3 0.19 0.4 0.39 0.56 1.31 -3.77 -0.18 -0.19 0.98 -0.18 -1.23 -0.33 -0.4 -0.41 -0.61 -0.75
1.48 1.16 0.41 -0.04 -1.05 -1.31 -2.27 -1.97 -1.59 -0.5 0.02 1.32 -4.03 -2.69 -4.77 -1.18 0.81 0.88 0.58 -2.47 0.81 -5.97 0.15 0.05 1.06 0.59 -1.45 -0.91 0.43 0.28 0.21 -0.52
0.1 -0.18 -0.16 -0.11 0.11 0.02 0.04 0.28 0.19 0.1 0.26 0.13 -2.3 -1.53 -0.45 -1.55 0.62 0.11 -0.42 -0.02 0.86 0.07 -0.23 -0.76 -0.73 -0.58 0.45 0.85 0.35 0.33 0.22 -0.05
0.81 0.47 0.45 0.34 0.4 0.18 0.19 0.6 0.53 0.55 0.64 0.92 -1.77 -1.36 -0.46 -1.15 -0.35 -0.54 -0.35 -1.98 -0.03 -5.19 -0.36 -0.34 -0.54 -0.16 0.07 0.07 -0.09 -0.06 0.15 0.2
1.69 0.88 0.19 -0.18 -0.34 -0.45 -0.42 -0.33 -0.38 -0.52 -0.27 0.72 -6.24 -2.79 -3.52 -4.57 -0.04 0.35 1.15 0.38 0.88 -2.99 -0.26 -0.08 0.86 -0.75 -0.04 -0.16 0.31 0.32 -0.55 -0.65
1.39 0.81 0.43 0.26 0.07 0.21 -0.22 -0.21 -0.13 -0.26 0.02 0.27 -1.67 -0.89 -2.02 -1.38 -0.5 0.17 0.51 -0.32 0.74 -2.4 -0.32 -0.45 0.7 -0.49 -0.37 -0.73 0.59 0.49 -0.15 -0.45

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.