Heatmap: Cluster_46 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
0.46 0.48 0.28 -0.02 0.47 0.55 -0.24 -0.15 0.04 0.09 0.11 -0.14 -0.85 -1.47 -0.76 -0.11 0.5 -0.12 -0.67 -0.49 -1.7 -0.15 0.7 0.39 0.52 -1.24 -0.23 0.12 0.3 0.58 -0.33 -0.38
- - 2.85 1.51 2.47 - 1.98 - - - 2.09 - - - - - - - - - - - - - 1.49 - 2.43 - - - - -
-0.33 0.24 1.26 0.44 1.04 0.9 -0.49 -1.68 -0.61 -2.08 -1.45 -0.65 -1.79 -2.78 -2.73 0.96 0.23 0.04 0.3 -1.41 -0.45 -1.15 -0.61 -1.52 0.53 -0.27 1.21 1.36 -0.08 0.35 -0.67 -0.14
0.82 0.24 2.04 0.9 0.03 0.46 0.05 -0.54 0.48 0.84 2.18 -0.03 - - - - 0.62 0.83 -3.19 - - - 0.86 0.63 - -2.05 - - -1.21 -0.58 -0.02 0.21
- 1.09 3.2 -0.28 - - - -0.06 - - - - 2.38 2.08 1.63 1.48 0.37 - 0.25 - - - - - - - - - - - - 0.15
-1.76 2.12 2.63 - - - 0.21 - - - - -0.46 -0.11 - - -2.22 -0.11 2.91 -0.53 - - - -0.58 -0.58 0.83 - - - -0.78 -0.11 0.77 1.43
-3.04 -0.29 1.47 - 0.36 -1.68 0.57 -0.44 - - - - -1.53 1.56 1.97 0.52 -0.68 0.56 0.64 - - - 0.37 1.14 - 1.26 -0.1 0.71 0.62 0.35 -0.68 -1.75
-17.51 0.16 2.3 -18.18 -4.09 -1.61 1.77 - 1.06 0.12 0.4 1.04 - - - -1.51 1.0 1.37 -0.22 - - - -1.07 - 2.08 - - - -1.07 1.23 1.2 -
0.5 0.02 2.46 1.02 -2.44 1.21 -0.8 1.33 1.6 0.58 -0.86 0.75 -1.82 -1.39 -4.19 -2.37 -3.53 1.41 -0.73 - - - -2.39 -0.1 0.15 -2.48 -2.27 -1.26 -0.35 -1.51 -0.21 -1.28
0.38 1.02 1.08 0.41 0.31 0.96 -0.28 -1.15 -1.39 -1.17 -0.77 -0.42 -2.65 -6.68 -4.45 1.05 0.11 0.41 0.07 -0.31 -3.11 -0.35 0.7 0.29 0.51 -2.52 0.65 1.2 -0.23 0.54 -1.45 -2.6
0.58 0.73 0.49 0.13 0.15 0.18 0.39 0.72 0.49 0.14 0.14 -0.03 -0.51 0.73 0.4 -0.1 -0.36 0.12 0.0 0.21 -1.37 0.46 -0.7 -1.2 -1.56 -0.81 0.19 0.04 -0.51 -0.37 -2.02 -1.79
0.41 0.7 2.76 -0.78 -0.66 - - -0.01 0.05 -0.12 -0.88 0.18 - 0.13 - - - 0.68 0.31 - - - 0.96 1.67 1.34 - - - 0.81 0.9 0.28 -
0.61 0.62 1.57 0.54 0.97 -0.18 -0.86 0.57 1.39 1.37 0.07 1.57 -2.0 -0.04 0.63 -1.88 -3.04 - -1.48 - -0.7 - -2.15 -0.81 - 0.55 1.23 -0.73 -1.5 -1.44 -2.55 -2.5
-3.63 - 2.32 - - - - -2.4 - - - -1.01 -1.33 1.74 -0.22 0.16 -3.27 - 1.73 - -21.86 - - -1.14 - -1.73 -1.54 - 0.97 1.35 2.61 2.44
-2.77 - 2.71 0.74 - 1.4 1.6 -1.19 -0.43 -0.24 - -1.96 - - - -0.49 -1.79 - 2.46 - - - -1.85 -1.71 - 1.77 0.48 0.39 -0.94 -0.79 -0.25 -0.9
- - 5.0 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-1.3 -2.48 2.43 -2.39 0.95 0.64 -0.12 -0.89 -3.22 -0.69 - -0.66 -0.79 -3.4 -0.86 -1.91 -1.31 -0.09 1.16 -3.19 1.33 -4.83 -2.18 -1.26 -0.95 1.03 1.01 2.55 -1.77 -3.74 -2.11 -2.86
1.05 0.59 1.42 -0.07 0.28 -0.08 -0.2 -0.26 0.37 0.31 0.25 0.66 -2.26 -0.25 -0.53 -1.24 -0.75 -0.46 -0.02 - -3.42 - 0.7 1.27 0.38 0.12 -0.02 -1.31 -0.09 0.1 0.0 -2.01
-0.01 0.55 1.62 1.1 1.38 0.88 1.19 0.52 1.19 0.22 0.44 0.0 - - -1.16 -1.97 -0.46 -1.59 -0.81 - - - -2.08 - -0.11 1.09 0.49 1.06 -1.54 -1.54 -2.16 -1.64
0.73 1.38 2.7 - - 0.1 -0.93 0.5 -0.88 -0.19 - -0.02 -0.69 0.06 2.34 -0.51 -0.68 0.34 -0.81 - - - -0.87 - - - 0.62 - 0.09 0.2 -0.82 0.11
0.49 -1.27 0.99 -0.6 -2.26 -0.89 -0.36 -1.91 0.04 0.47 0.78 0.65 1.28 -1.84 -1.15 0.36 -1.4 -1.34 0.87 -1.0 - -0.98 -1.36 -0.71 -5.06 1.7 1.4 2.08 -2.81 -1.83 -2.59 -2.05
0.12 0.96 1.39 0.79 1.28 -0.18 0.11 1.25 0.72 0.62 0.65 0.88 -3.05 -0.43 -1.03 -1.99 -3.71 -0.83 -2.41 - - -3.22 -0.15 0.1 0.73 0.57 0.3 0.96 -4.69 -3.13 -2.64 -2.68
-2.33 - 2.84 2.2 2.03 -0.73 - - - - -0.19 -0.58 - - - -0.91 - -0.49 3.39 - - - - - - - 0.35 - - -0.95 -1.69 -
-1.46 - 2.26 -1.9 -2.82 -0.45 -1.06 -0.75 -0.65 -0.74 -2.38 -0.55 -2.59 - -3.18 - -0.59 -0.02 -0.41 0.12 1.62 - -2.78 -2.79 3.22 0.25 0.06 -0.23 0.33 0.78 - -
-2.08 0.46 1.8 -0.22 - - -1.24 0.18 - 1.88 - -1.28 -2.03 - - -1.87 1.8 - 0.4 - -0.79 - 0.63 1.82 - - 1.29 - 1.47 1.54 0.14 -2.26
-1.4 - 2.5 -0.53 - -0.41 0.94 -0.87 0.94 - 2.24 -0.69 - -0.27 - -0.24 - - - - - 1.09 0.4 - - - 1.35 2.84 - - - -
0.0 0.47 1.51 0.54 0.36 0.12 -0.61 0.78 0.28 0.98 0.45 0.37 -1.15 -1.81 -0.27 - -0.62 -2.0 -0.7 - - - -0.08 -0.69 -0.98 0.83 1.3 0.43 -0.73 -0.25 0.14 0.53
-0.26 -0.27 1.59 -0.37 -2.16 0.78 1.36 -1.24 0.46 -0.47 0.37 -0.62 -2.63 0.56 1.62 -2.78 -0.33 - 0.96 -2.91 1.74 - -1.64 -2.27 -0.24 -0.01 -1.17 -0.01 -0.86 -0.72 -0.03 -0.84
- -2.31 1.89 - -2.38 -0.01 0.62 -0.65 1.81 1.4 0.67 -2.19 -2.07 - -0.68 -2.03 -1.11 - - - - - - - 2.33 - 1.8 2.16 -0.17 -1.15 -1.18 -1.23
0.57 -0.13 1.33 -0.52 0.02 -0.54 -0.88 0.96 -0.46 0.08 -2.12 -0.73 -0.45 -1.96 -0.11 -0.1 0.67 0.97 1.38 0.13 -2.59 -0.78 -0.02 0.99 - -0.83 -1.7 0.31 0.45 0.24 -0.7 -1.08
-0.38 -0.05 1.6 -0.12 0.75 1.05 1.88 1.76 1.4 0.44 -0.38 -0.48 - -2.25 -0.89 - - - - - - - - - - 0.97 1.9 1.83 - - - -
- - 4.26 - - - - - - - - - 0.35 - - - - - 3.2 - - - 0.34 - - - - - - 0.21 - -
0.26 -0.49 2.3 0.94 -1.1 1.05 -0.29 -0.36 0.26 0.68 -1.4 0.75 - -0.97 -5.02 -2.63 - -0.08 -3.15 - - 2.47 -3.62 -2.17 0.95 - -0.12 - -0.51 - 0.64 0.61
0.44 0.15 1.39 -0.27 - 0.65 0.91 0.58 1.63 -0.04 2.14 0.54 - - - - -1.61 -1.07 0.19 - - - 0.23 0.34 -0.6 0.7 0.67 0.58 -2.61 -0.29 -1.65 -2.72
0.55 -0.69 2.06 -0.54 -0.42 0.12 - -0.53 0.52 1.88 0.68 -1.55 - - - - - - - - 1.82 - - - 2.58 0.64 0.94 - 0.06 -1.41 - 0.06
0.19 -1.24 2.98 -0.36 -1.04 - -0.27 -1.49 0.11 - 1.54 - 0.45 -1.18 1.12 0.12 0.03 1.21 -1.04 - - - - - - -0.08 0.33 1.14 0.89 -0.03 - -
-0.21 0.99 1.03 0.63 1.2 1.09 0.39 -0.46 -0.58 -0.64 -0.63 -0.25 -0.68 -2.65 -1.26 0.52 0.15 -0.8 0.49 -0.01 -0.64 0.12 -0.87 -1.68 -0.99 -1.7 0.47 1.18 -0.69 -0.67 -0.66 -0.62
0.85 0.95 1.43 0.37 -0.63 0.45 0.78 0.96 -0.8 0.29 0.07 0.25 -1.21 1.12 -2.16 -0.53 -0.74 -5.43 -1.98 - -1.02 -0.67 -0.18 0.33 -0.15 0.36 1.17 0.12 -1.46 -2.06 -0.92 -1.98
0.23 1.47 1.7 1.22 1.67 -0.44 1.5 -0.0 0.78 0.69 0.64 0.71 - - - - -1.04 -2.04 -1.52 - - - -0.17 -0.77 - - 0.23 0.27 0.16 -0.5 -0.8 -0.17
-0.15 -0.79 1.31 -0.38 1.05 0.23 0.69 -0.41 -0.71 -0.07 -0.33 -0.2 -0.27 -2.4 -0.3 0.34 0.13 1.56 0.9 - -2.29 -3.04 0.54 0.63 - -1.48 -0.89 - 0.33 -0.05 0.6 0.54
- 2.62 2.99 - - - - - - - - - -0.91 - 0.62 0.1 -0.06 0.47 0.95 2.72 - - -1.11 -0.06 - - - - -0.01 -1.03 -0.06 -
- 1.08 2.79 - 2.43 - - - - - - - - - -0.99 - - 1.98 - - - - - - 2.78 1.22 1.45 - -0.97 -0.55 - -
-2.18 -0.44 4.38 -0.91 - 0.49 1.31 -1.23 -0.34 0.45 - - -1.09 0.19 -1.05 - 0.14 - - - - - - - - - - - - - - -
-0.39 -0.71 2.07 0.69 1.14 0.6 0.34 0.62 0.37 0.04 1.36 0.26 -1.55 1.31 1.87 -0.26 -1.62 -1.15 -3.27 - - - -2.15 -4.73 - 0.98 -0.39 -0.66 -2.94 -2.83 -4.76 -3.32
1.04 1.04 1.28 -1.01 - 2.4 1.65 - 1.86 2.39 1.3 -0.72 - - - - - - - - - - -1.34 - 1.93 - - - - -1.47 - -
- 1.32 4.88 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-1.93 1.09 1.67 -1.91 - 0.67 0.24 -0.69 -0.9 0.48 -0.81 0.44 1.44 0.13 -0.51 1.27 -0.77 -0.72 1.3 - - - -0.45 1.42 -0.34 -1.39 -1.18 - 0.34 -0.39 -0.1 -1.49
0.55 - 1.76 - - - 1.0 - 0.96 1.19 - - - - - 1.04 - - 0.89 - - - - 0.99 2.9 - 2.49 - - 0.95 - -
-0.67 -0.24 1.36 0.5 1.52 0.74 0.31 -1.75 -0.6 0.66 1.23 -0.7 0.81 -1.48 -4.07 -0.39 0.82 - -0.25 - - - 0.89 0.47 -1.31 - 0.37 -1.14 -0.13 -0.07 0.16 0.42
-2.16 -1.44 3.13 -1.71 - - 0.24 - -1.29 0.47 - - 1.76 0.83 -0.91 0.65 - -0.14 -0.2 - - - -1.24 -0.19 - 0.86 2.21 - -0.24 -0.18 -0.22 -
1.16 1.68 1.99 0.5 - 0.61 -1.56 0.8 1.47 -0.66 - -0.01 - 2.21 1.37 - - - - - - - - -1.31 - -0.41 1.47 1.02 - - - -
-0.53 -1.17 2.23 0.98 0.39 1.3 1.42 1.57 1.33 -0.16 1.18 1.26 -2.45 -1.58 -0.36 -2.3 -0.58 0.21 -1.02 - - - - - 0.18 -0.49 -1.34 - -1.6 -1.6 - -
-2.57 - 2.89 2.42 -21.78 - -3.15 - - 0.71 - - - - - - -0.73 - -0.03 - 0.86 - - - 2.85 -1.05 2.31 - -1.59 -0.21 -3.66 -
- - 2.53 -1.74 - - - - 1.34 - - - 0.57 - - - - - 0.3 - - - - - - 1.03 2.68 3.61 - - - -
-1.41 -1.26 1.25 -0.42 0.21 0.02 0.99 -0.35 -0.21 0.7 0.66 -0.31 -0.59 -0.84 0.58 -1.09 -1.14 -1.13 0.34 0.1 -0.89 - 0.03 0.32 - 1.47 -0.02 1.45 -0.04 -0.32 -2.29 -0.85
- - 4.25 - - - 0.99 - - 2.61 - - - - - - - - - - - - - - - - - 2.05 - - -0.48 -
1.48 0.61 1.84 0.43 -3.27 -3.15 -0.7 -1.35 - - -1.76 -1.13 -0.11 -2.22 0.44 -2.25 0.91 -0.02 2.54 - -2.75 - 0.23 -0.55 0.23 0.24 -0.19 -0.31 0.39 0.68 -2.63 -1.94
0.03 0.01 0.59 -1.17 -2.56 0.23 -0.36 -0.19 0.52 -0.27 -0.09 -0.32 -1.98 -4.75 1.47 -0.11 0.73 -0.14 1.82 - - - -0.49 -1.33 - 0.43 0.76 0.71 0.67 0.72 0.43 -0.81
- - 3.61 - - -0.11 - - - 0.59 - - -0.23 - -0.7 0.82 - 0.6 3.35 - - - -0.39 -0.32 - - - - - -0.27 - -
- - 4.17 - - - - - - - - - - 3.8 - - - - - - - - - - - - - - - - - -
0.45 0.6 0.62 0.6 0.89 0.98 0.24 -0.16 -0.48 -0.24 -0.44 -0.2 0.41 -1.33 -1.06 -0.01 -0.16 -0.3 -0.14 -0.39 -0.21 -0.46 0.12 0.18 -0.27 -0.27 0.3 0.64 -0.9 -0.95 -0.99 -0.75
0.65 0.06 1.72 -0.19 -1.19 1.08 1.39 -0.57 0.15 0.17 0.54 0.73 -1.2 -1.31 0.98 -0.04 1.02 0.45 -2.02 -4.31 - - -1.73 -0.53 - -2.51 0.14 -0.43 0.59 0.4 -0.92 -2.49
-0.35 0.97 0.74 -0.4 0.5 0.24 -1.26 -1.29 0.01 -0.24 0.18 -0.31 0.58 -0.39 -1.12 0.7 -0.08 0.28 0.51 0.45 -3.96 - 0.9 0.65 -2.48 -0.29 -0.59 -0.7 0.46 0.46 -0.22 -0.1
-0.5 0.32 2.95 0.92 -2.27 - 0.48 -0.66 1.71 1.57 0.6 0.49 - -1.63 1.96 - - - -2.41 - - - - - 0.06 - -0.15 1.06 -2.65 - -1.14 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.