Heatmap: Cluster_72 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Aerial tissue - Light - ZT1	Aerial tissue - Light - ZT3	Aerial tissue - Light - ZT5	Aerial tissue - Light - ZT7	Aerial tissue - Light - ZT9	Aerial tissue - Light - ZT11	Aerial tissue - Dark - ZT1	Aerial tissue - Dark - ZT3	Aerial tissue - Dark - ZT5	Aerial tissue - Dark - ZT7	Aerial tissue - Dark - ZT9	Aerial tissue - Dark - ZT11	Roots	Root elongation and differentiation zone	Root meristematic zone	Aerial roots and rhizophores	Shoot tips	Microphyll	Strobili	Shoot apical meristem - AC	Shoot apical meristem - Core	Shoot apical meristem - P1	Stem - Top	Stem - Bottom	Whole plant	Aerial tissue - Stress - Dark	Aerial tissue - Stress - High light	Aerial tissue - Stress - Cont	Aerial tissue - Stress - 37C 1h	Aerial tissue - Stress - 37C 3h	Aerial tissue - Stress - 4C 1h	Aerial tissue - Stress - 4C 3h
Smo104980	-0.27	-0.41	0.29	0.27	0.27	0.58	0.82	0.23	0.81	0.41	0.42	-0.31	1.7	2.19	0.49	0.29	-0.81	-1.36	-3.86	-5.15	-1.45	-	-0.85	-1.03	-1.54	-2.27	-1.56	-1.32	-1.68	-1.41	0.19	0.11
Smo114160	-	-	-	-	-	-	-	-	-	-	-	-	-	4.23	3.73	-	-	-	-	-	-	-	-	-	-	-11.0	-	-	-	-	-	-
Smo118035	0.69	0.77	-1.34	0.25	-2.38	-1.58	-0.32	0.09	-2.63	-1.36	0.57	0.08	-	3.39	2.24	-	-1.68	0.31	-	-	-	1.48	-1.64	-0.61	-	-1.52	-1.39	-	-2.67	-2.68	-	-
Smo119243	-0.41	-0.81	-2.24	-1.61	-1.26	-3.51	-0.44	-1.68	-3.08	-0.39	-0.83	-2.0	1.21	3.65	2.32	0.25	-2.05	1.21	-0.6	-3.31	-	-3.86	-2.41	-0.3	-1.8	-2.07	-2.92	-	-1.56	-1.48	-4.97	-4.09
Smo129451	-	-	-	-	-	-	-	0.95	-	-	-	-	1.5	-	2.96	-	-	2.75	2.96	-	-	-	-	-	-	-	-	-	1.38	-	-	1.27
Smo133730	-4.29	-2.97	-5.34	-4.74	-3.01	-3.64	-3.17	-3.11	-3.31	-3.18	-3.65	-3.88	0.5	2.95	1.33	1.73	-4.62	2.06	0.19	-4.99	-2.32	-0.81	-3.86	-1.49	-3.25	-1.54	0.36	-1.87	0.1	1.37	0.8	1.0
Smo17157	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo267384	-0.12	-0.26	-0.07	0.06	-0.04	0.04	0.12	0.2	0.16	0.23	0.08	0.14	0.61	1.36	0.83	-0.11	-0.23	-0.42	-0.35	-0.63	0.13	-0.51	0.12	0.22	-0.64	-0.31	-1.03	-1.16	-0.22	-0.21	-0.45	-0.25
Smo35960	-1.27	-2.5	1.37	-1.03	-0.81	-0.69	-1.43	0.15	-1.84	-1.65	-1.7	-2.03	0.07	2.21	3.57	0.66	-0.56	-0.33	-0.52	-	-	-	-	-2.01	-	-	-0.37	-	-1.01	-1.37	-0.52	-0.71
Smo403841	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo404120	-2.01	-1.73	-3.59	-	-3.11	0.47	-0.95	-1.34	-1.97	-3.56	-2.33	-2.28	0.39	3.96	-0.29	0.4	-	0.34	-1.19	-	-	-	-	-3.13	-	0.45	1.38	-	-1.25	0.14	0.5	-0.94
Smo406729	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo406775	-0.57	-1.11	-0.96	-0.37	-0.03	-1.45	-1.1	-0.81	-0.51	-0.33	-0.06	-0.3	2.14	2.71	2.14	2.27	-4.86	-7.03	0.19	-6.21	-	-	-4.17	-3.37	-2.99	-1.09	-0.86	-0.84	-2.47	-1.58	-3.7	-3.02
Smo410408	-1.67	-1.77	-1.38	-0.8	-0.08	-0.75	-0.32	-0.81	-0.94	-0.76	-0.6	-1.04	1.13	2.72	2.81	1.78	-2.76	-7.23	-1.85	-	-	-	-3.79	0.44	-0.68	-1.49	-0.44	0.01	-2.68	-0.02	-3.05	-2.27
Smo410458	-4.36	-3.79	-3.35	-2.72	-1.45	-2.14	-2.14	-2.46	-2.45	-3.42	-3.14	-3.6	0.06	3.8	3.36	0.88	-3.14	-4.82	-2.9	-	-	-	-4.71	-0.4	-4.42	-3.45	-1.11	-1.09	-3.41	-0.65	-3.63	-2.84
Smo410926	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo411202	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.65	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.28	-
Smo411405	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo411805	-2.09	-2.09	-1.83	-0.88	-1.47	-1.75	-1.07	-2.27	-1.58	-1.34	-1.31	-1.17	1.1	1.97	2.01	1.65	-0.12	2.03	0.6	-	-4.69	-	-3.73	-1.26	1.99	-0.62	-2.49	-0.94	-0.35	-0.6	-1.68	-1.25
Smo412484	-	-	-	-	-	-	-	-	-	-	-	-	-	2.77	4.65	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo413756	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo414251	-	-	-	-	-	-	-	-	-	-	-	-	-1.78	3.19	4.26	-	-	0.03	-4.12	-	-	-	-	-	-	1.11	-2.11	-	-	-	-	-
Smo415434	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo416580	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo416786	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo416825	-5.29	-6.42	-6.53	-4.16	-1.2	-0.7	-0.18	-2.72	-3.54	-4.08	-6.15	-6.63	-3.71	2.89	2.92	-1.46	-2.33	1.0	-0.12	0.2	-0.24	-0.66	-2.55	-3.62	-1.54	-3.32	1.54	-0.73	-0.96	-0.49	0.29	0.85
Smo417534	-	-	-	-	-	-	-	-	1.27	-	-	-	-	3.06	-	1.76	-	-	1.6	-	-	-	-	-	-	-	-	3.89	-	-	-	-
Smo417586	-0.83	-1.1	-0.64	-0.71	0.02	-0.78	-0.98	-1.38	0.41	-1.39	-0.66	-0.27	0.8	2.51	1.2	1.29	-0.67	-1.39	-1.94	-0.8	-1.56	-	1.21	0.24	-2.39	-0.66	0.64	0.72	-1.29	-0.48	-0.87	-1.0
Smo417824	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo418199	-	-	-	-	-	-	-	-	-	-	-	-	-	3.92	-	-	-	-	-	-	-	-	4.08	-	-	-	-	-	-	-	-	-
Smo418583	-	-	-	-	-	-	-	-	-	-1.43	-	-	2.37	3.71	2.75	2.11	-	-	-1.23	-	-	-	-	-	-	-	0.04	-	-	-1.21	-1.22	-
Smo419446	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo420143	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo421332	-0.21	-0.5	0.92	-0.56	0.32	-1.28	-3.94	-1.55	-1.67	-1.09	-0.89	-1.18	-5.49	2.78	2.52	-0.58	-2.13	-3.06	-1.92	-1.36	-	2.05	-2.13	-1.94	-0.35	-2.35	-0.68	-0.88	-1.45	-0.64	-1.44	0.64
Smo421937	-	-	-	-	-	-	-	-	-	-	-	-	3.21	2.94	-	-	-	-	-	-	-	-	-	1.26	-	-	2.77	-	0.22	0.3	0.27	1.2
Smo422026	1.11	-0.2	-	-	-	0.09	-	-	-	-	-	-	-	3.25	0.9	0.08	-	0.58	-0.25	-	-	-	-0.09	-	-	-	-	3.25	-0.2	0.82	-	-
Smo422111	-	-0.77	-0.0	0.31	-	0.27	0.19	1.36	-	1.09	2.74	0.28	0.53	-0.43	2.9	-0.47	-0.62	-	1.37	-	-	-	-	-	-	-	-	-	-	-	-0.64	-
Smo424577	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo428451	-	-	-	-	-	-	-	-	-	-	-	-	-	3.08	2.59	4.13	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo428571	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.12	3.87	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo428640	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo429168	-	-	-	-	-	-	-	-	-	-	-	-	-0.79	2.78	3.12	-	-4.5	-	0.39	-	-	1.99	-0.37	-0.1	1.35	1.05	0.92	-	0.14	-0.07	-2.16	-
Smo429173	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo429274	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo430437	-	-	-	-	-	-	-	-	-	-	-	-	-	2.9	1.75	-	-	-	1.49	-	-	-	-	-	-	2.46	-	3.68	-	-	-	-
Smo432429	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo441276	-1.7	-2.01	-2.39	-0.85	-0.09	-0.79	-1.28	-1.21	-1.43	-1.29	-0.77	-1.33	-0.08	2.05	2.17	0.72	0.59	2.74	-1.83	-	-	-	-4.3	-0.64	-1.91	-1.63	-1.24	-0.21	-0.0	0.84	-0.67	-0.21
Smo83018	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.71	-	-	3.55	-	-	-	-	2.84	-	-	-	-	-	-	-	-	-
Smo84864	-1.4	-1.0	-1.3	-0.98	-0.28	-0.8	-1.05	-1.69	-1.0	-1.46	-0.57	-1.19	-0.15	2.21	2.83	0.68	-1.85	-1.01	-0.64	-	-	-	0.39	1.33	-2.52	-1.09	0.6	-1.23	-1.12	-0.45	0.17	0.72
Smo91192	0.28	-0.21	-0.54	0.31	0.48	0.69	-0.03	0.24	-0.22	0.35	-0.11	0.17	-3.32	1.61	1.8	-1.4	-0.28	-1.39	-0.5	0.26	-0.68	1.09	-1.98	-2.18	-0.7	-1.56	0.18	0.32	-0.78	-0.93	-1.33	-1.21
Smo97913	-1.0	-0.87	-0.34	-0.38	-0.78	-0.66	-0.55	-1.24	-0.66	-0.79	-0.63	-0.93	-1.17	2.53	3.24	-0.75	-3.09	-2.96	-0.66	1.21	-3.4	-0.2	-3.64	-0.8	-4.2	-1.15	0.59	-1.63	-2.77	-0.67	-1.82	-1.92
Smo98543	-0.73	-0.74	-4.2	-2.33	-1.31	-1.68	-0.04	-0.48	-1.11	-2.58	-0.83	-1.77	-0.72	3.47	1.8	-0.24	-0.44	1.58	1.11	-3.0	-	0.93	-1.93	-0.18	-3.52	-3.42	-	-2.13	-1.33	-0.59	-3.23	-4.73
Smo98674	-0.14	0.07	-0.49	-0.79	-1.9	-0.57	-0.01	-0.75	-0.47	-0.75	0.13	-0.83	-0.18	2.76	2.33	0.16	0.34	0.0	-0.23	-2.14	-1.59	1.2	-2.5	-0.66	-1.99	-0.37	-1.85	-1.35	-1.78	-1.29	-2.74	-3.14

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.