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  5. Gb_21315

Gb_21315


Description : component Pcf11 of Cleavage Factor II (CF-IIm) complex


Gene families : OG0001781 (Archaeplastida) Phylogenetic Tree(s): OG0001781_tree ,
OG_05_0002038 (LandPlants) Phylogenetic Tree(s): OG_05_0002038_tree ,
OG_06_0001962 (SeedPlants) Phylogenetic Tree(s): OG_06_0001962_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_21315
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00210200 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.05 Archaeplastida
AT2G36480 No alias ENTH/VHS family protein 0.03 Archaeplastida
GSVIVT01012646001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.05 Archaeplastida
GSVIVT01033783001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.03 Archaeplastida
LOC_Os08g08830.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.04 Archaeplastida
LOC_Os09g39270.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.07 Archaeplastida
MA_10040687g0010 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.02 Archaeplastida
MA_10433250g0020 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.05 Archaeplastida
Mp8g18940.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.03 Archaeplastida
Pp3c16_6360V3.1 No alias PCF11P-similar protein 4 0.02 Archaeplastida
Pp3c16_6390V3.1 No alias PCF11P-similar protein 4 0.02 Archaeplastida
Solyc09g009120.4.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.07 Archaeplastida
Solyc10g083590.2.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.05 Archaeplastida
Zm00001e009485_P001 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.03 Archaeplastida
Zm00001e021648_P002 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.06 Archaeplastida
Zm00001e033620_P001 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.04 Archaeplastida
Zm00001e039948_P002 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004484 mRNA guanylyltransferase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR006903 RNA_pol_II-bd 140 192
No external refs found!