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  5. Gb_23151

Gb_23151


Description : Probable polygalacturonase OS=Vitis vinifera (sp|a7pzl3|pglr_vitvi : 291.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 72.7)


Gene families : OG0000349 (Archaeplastida) Phylogenetic Tree(s): OG0000349_tree ,
OG_05_0004328 (LandPlants) Phylogenetic Tree(s): OG_05_0004328_tree ,
OG_06_0003745 (SeedPlants) Phylogenetic Tree(s): OG_06_0003745_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23151
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AT1G19170 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
AT3G06770 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT3G42950 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
GSVIVT01015044001 No alias Probable polygalacturonase OS=Vitis vinifera 0.07 Archaeplastida
GSVIVT01028057001 No alias Probable polygalacturonase OS=Vitis vinifera 0.02 Archaeplastida
GSVIVT01035089001 No alias Probable polygalacturonase OS=Vitis vinifera 0.02 Archaeplastida
LOC_Os02g54030.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
MA_10430135g0020 No alias Probable polygalacturonase OS=Vitis vinifera... 0.05 Archaeplastida
MA_10435166g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc07g042160.3.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.06 Archaeplastida
Zm00001e006249_P001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
Zm00001e023760_P001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 Archaeplastida
Zm00001e034257_P001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
Zm00001e039674_P002 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Neighborhood
MF GO:0015020 glucuronosyltransferase activity IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 172 357
IPR000743 Glyco_hydro_28 40 135
No external refs found!