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Description : component PININ of RNA quality control Exon Junction complex
Gene families : OG0005056 (Archaeplastida) Phylogenetic Tree(s): OG0005056_tree ,
OG_05_0028097 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0026358 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_25266 | |
| Cluster | HCCA: Cluster_68 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00173p00035440 | evm_27.TU.AmTr_v1... | RNA processing.RNA quality control Exon Junction complex... | 0.03 | Archaeplastida | |
| Cre09.g387300 | No alias | RNA processing.RNA quality control Exon Junction complex... | 0.02 | Archaeplastida | |
| LOC_Os03g49520.1 | No alias | component PININ of RNA quality control Exon Junction complex | 0.05 | Archaeplastida | |
| MA_49744g0010 | No alias | component PININ of RNA quality control Exon Junction complex | 0.04 | Archaeplastida | |
| MA_503521g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| Solyc01g104560.3.1 | No alias | component PININ of RNA quality control Exon Junction complex | 0.04 | Archaeplastida | |
| Zm00001e005379_P001 | No alias | component PININ of RNA quality control Exon Junction complex | 0.05 | Archaeplastida | |
| Zm00001e012229_P001 | No alias | component PININ of RNA quality control Exon Junction complex | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| CC | GO:0005667 | transcription factor complex | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0140110 | transcription regulator activity | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |