Gb_25885

Description : Enzyme classification.EC_3 hydrolases.EC_3.1 hydrolase acting on ester bond(50.3.1 : 443.2) & Endonuclease 4 OS=Arabidopsis thaliana (sp|f4jjl0|endo4_arath : 407.0)

Gene families : OG0001168 (Archaeplastida) Phylogenetic Tree(s): OG0001168_tree ,
OG_05_0001313 (LandPlants) Phylogenetic Tree(s): OG_05_0001313_tree ,
OG_06_0001292 (SeedPlants) Phylogenetic Tree(s): OG_06_0001292_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_25885
Cluster	HCCA: Cluster_270

Target	Alias	Description	ECC score	Gene Family Method
AT1G11190	BFN1, ENDO1	bifunctional nuclease i	0.05	Archaeplastida
LOC_Os01g03730.1	No alias	Enzyme classification.EC_3 hydrolases.EC_3.1 hydrolase...	0.02	Archaeplastida
LOC_Os04g54390.1	No alias	Endonuclease 1 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_549241g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc02g078910.3.1	No alias	Endonuclease 1 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Zm00001e004395_P002	No alias	Endonuclease 1 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Zm00001e025725_P001	No alias	Enzyme classification.EC_3 hydrolases.EC_3.1 hydrolase...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006308	DNA catabolic process	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006644	phospholipid metabolic process	IEP	Neighborhood
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Neighborhood
BP	GO:0006658	phosphatidylserine metabolic process	IEP	Neighborhood
BP	GO:0006659	phosphatidylserine biosynthetic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0007034	vacuolar transport	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008234	cysteine-type peptidase activity	IEP	Neighborhood
BP	GO:0008654	phospholipid biosynthetic process	IEP	Neighborhood
BP	GO:0030258	lipid modification	IEP	Neighborhood
BP	GO:0030259	lipid glycosylation	IEP	Neighborhood
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Neighborhood
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Neighborhood
BP	GO:0046486	glycerolipid metabolic process	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
BP	GO:0070085	glycosylation	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003154	S1/P1nuclease	29	293

External Links

No external refs found!

Gb_25885

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation