AT2G39930 (ATISA1, ISA1)

Aliases : ATISA1, ISA1

Description : isoamylase 1

Gene families : OG0001068 (Archaeplastida) Phylogenetic Tree(s): OG0001068_tree ,
OG_05_0002327 (LandPlants) Phylogenetic Tree(s): OG_05_0002327_tree ,
OG_06_0002831 (SeedPlants) Phylogenetic Tree(s): OG_06_0002831_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G39930
Cluster	HCCA: Cluster_214

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00166810	evm_27.TU.AmTr_v1...	Carbohydrate metabolism.starch...	0.03	Archaeplastida
AMTR_s00156p00067780	evm_27.TU.AmTr_v1...	Carbohydrate metabolism.starch...	0.03	Archaeplastida
Cre03.g207713	No alias	Carbohydrate metabolism.starch...	0.02	Archaeplastida
Pp3c14_11860V3.1	No alias	isoamylase 1	0.04	Archaeplastida
Solyc07g014590.4.1	No alias	starch debranching enzyme. starch-debranching...	0.06	Archaeplastida
Zm00001e034431_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000023	maltose metabolic process	RCA	Interproscan
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004133	glycogen debranching enzyme activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004556	alpha-amylase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	ISS	Interproscan
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0005982	starch metabolic process	None	Extended
BP	GO:0005984	disaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009311	oligosaccharide metabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010021	amylopectin biosynthetic process	IMP	Interproscan
CC	GO:0010368	chloroplast isoamylase complex	IDA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
MF	GO:0016160	amylase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0019156	isoamylase activity	IDA	Interproscan
MF	GO:0019156	isoamylase activity	IMP	Interproscan
BP	GO:0019252	starch biosynthetic process	RCA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
CC	GO:0043033	isoamylase complex	None	Extended
BP	GO:0043085	positive regulation of catalytic activity	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044093	positive regulation of molecular function	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044434	chloroplast part	None	Extended
CC	GO:0044435	plastid part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050790	regulation of catalytic activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:2000896	amylopectin metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000025	maltose catabolic process	IEP	Neighborhood
BP	GO:0000226	microtubule cytoskeleton organization	IEP	Neighborhood
BP	GO:0000255	allantoin metabolic process	IEP	Neighborhood
BP	GO:0000256	allantoin catabolic process	IEP	Neighborhood
BP	GO:0000272	polysaccharide catabolic process	IEP	Neighborhood
MF	GO:0001871	pattern binding	IEP	Neighborhood
MF	GO:0003684	damaged DNA binding	IEP	Neighborhood
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0003941	L-serine ammonia-lyase activity	IEP	Neighborhood
MF	GO:0004134	4-alpha-glucanotransferase activity	IEP	Neighborhood
MF	GO:0004326	tetrahydrofolylpolyglutamate synthase activity	IEP	Neighborhood
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	Neighborhood
MF	GO:0004645	phosphorylase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005739	mitochondrion	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
BP	GO:0005983	starch catabolic process	IEP	Neighborhood
BP	GO:0006144	purine nucleobase metabolic process	IEP	Neighborhood
BP	GO:0006145	purine nucleobase catabolic process	IEP	Neighborhood
BP	GO:0006264	mitochondrial DNA replication	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006563	L-serine metabolic process	IEP	Neighborhood
BP	GO:0006730	one-carbon metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
BP	GO:0007020	microtubule nucleation	IEP	Neighborhood
BP	GO:0007166	cell surface receptor signaling pathway	IEP	Neighborhood
BP	GO:0007167	enzyme linked receptor protein signaling pathway	IEP	Neighborhood
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
BP	GO:0008285	negative regulation of cell proliferation	IEP	Neighborhood
MF	GO:0008721	D-serine ammonia-lyase activity	IEP	Neighborhood
BP	GO:0009112	nucleobase metabolic process	IEP	Neighborhood
BP	GO:0009251	glucan catabolic process	IEP	Neighborhood
BP	GO:0009313	oligosaccharide catabolic process	IEP	Neighborhood
BP	GO:0009657	plastid organization	IEP	Neighborhood
BP	GO:0009662	etioplast organization	IEP	Neighborhood
BP	GO:0009790	embryo development	IEP	Neighborhood
BP	GO:0009793	embryo development ending in seed dormancy	IEP	Neighborhood
BP	GO:0009965	leaf morphogenesis	IEP	Neighborhood
BP	GO:0010099	regulation of photomorphogenesis	IEP	Neighborhood
BP	GO:0010100	negative regulation of photomorphogenesis	IEP	Neighborhood
BP	GO:0010109	regulation of photosynthesis	IEP	Neighborhood
BP	GO:0010135	ureide metabolic process	IEP	Neighborhood
BP	GO:0010136	ureide catabolic process	IEP	Neighborhood
MF	GO:0010297	heteropolysaccharide binding	IEP	Neighborhood
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010628	positive regulation of gene expression	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	IEP	Neighborhood
MF	GO:0016832	aldehyde-lyase activity	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016841	ammonia-lyase activity	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0016854	racemase and epimerase activity	IEP	Neighborhood
MF	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	IEP	Neighborhood
MF	GO:0016881	acid-amino acid ligase activity	IEP	Neighborhood
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0017118	lipoyltransferase activity	IEP	Neighborhood
BP	GO:0030154	cell differentiation	IEP	Neighborhood
MF	GO:0030247	polysaccharide binding	IEP	Neighborhood
MF	GO:0030378	serine racemase activity	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
BP	GO:0031123	RNA 3'-end processing	IEP	Neighborhood
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0031425	chloroplast RNA processing	IEP	Neighborhood
BP	GO:0032042	mitochondrial DNA metabolic process	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0033258	plastid DNA metabolic process	IEP	Neighborhood
BP	GO:0033259	plastid DNA replication	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
MF	GO:0036361	racemase activity, acting on amino acids and derivatives	IEP	Neighborhood
BP	GO:0040034	regulation of development, heterochronic	IEP	Neighborhood
BP	GO:0042180	cellular ketone metabolic process	IEP	Neighborhood
BP	GO:0042372	phylloquinone biosynthetic process	IEP	Neighborhood
BP	GO:0042374	phylloquinone metabolic process	IEP	Neighborhood
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	Neighborhood
BP	GO:0042550	photosystem I stabilization	IEP	Neighborhood
BP	GO:0042737	drug catabolic process	IEP	Neighborhood
BP	GO:0042780	tRNA 3'-end processing	IEP	Neighborhood
MF	GO:0042781	3'-tRNA processing endoribonuclease activity	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	Neighborhood
BP	GO:0043605	cellular amide catabolic process	IEP	Neighborhood
BP	GO:0043628	ncRNA 3'-end processing	IEP	Neighborhood
BP	GO:0044247	cellular polysaccharide catabolic process	IEP	Neighborhood
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	Neighborhood
BP	GO:0044281	small molecule metabolic process	IEP	Neighborhood
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0045962	positive regulation of development, heterochronic	IEP	Neighborhood
BP	GO:0046113	nucleobase catabolic process	IEP	Neighborhood
BP	GO:0046352	disaccharide catabolic process	IEP	Neighborhood
BP	GO:0046416	D-amino acid metabolic process	IEP	Neighborhood
MF	GO:0046608	carotenoid isomerase activity	IEP	Neighborhood
MF	GO:0047661	amino-acid racemase activity	IEP	Neighborhood
BP	GO:0048366	leaf development	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0050793	regulation of developmental process	IEP	Neighborhood
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051186	cofactor metabolic process	IEP	Neighborhood
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0070178	D-serine metabolic process	IEP	Neighborhood
MF	GO:0071522	ureidoglycine aminohydrolase activity	IEP	Neighborhood
BP	GO:0072523	purine-containing compound catabolic process	IEP	Neighborhood
BP	GO:0090351	seedling development	IEP	Neighborhood
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Neighborhood
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:1905392	plant organ morphogenesis	IEP	Neighborhood
BP	GO:2000030	regulation of response to red or far red light	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004193	Glyco_hydro_13_N	76	170
IPR006047	Glyco_hydro_13_cat_dom	240	346

External Links

No external refs found!

AT2G39930 (ATISA1, ISA1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation