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  5. Gb_26878

Gb_26878


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 171.0)


Gene families : OG0000364 (Archaeplastida) Phylogenetic Tree(s): OG0000364_tree ,
OG_05_0000134 (LandPlants) Phylogenetic Tree(s): OG_05_0000134_tree ,
OG_06_0000108 (SeedPlants) Phylogenetic Tree(s): OG_06_0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_26878
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Gb_00288 No alias no hits & (original description: none) 0.06 Archaeplastida
Gb_01729 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_03442 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_06034 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_06223 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_06978 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_08105 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_08402 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_08666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_13320 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_15074 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_16799 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_18335 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.05 Archaeplastida
Gb_20056 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_21118 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_21518 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_22414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_23548 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_24597 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_25092 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_25323 No alias no hits & (original description: none) 0.08 Archaeplastida
Gb_26666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_26718 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_27233 No alias no hits & (original description: none) 0.07 Archaeplastida
Gb_27666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_28622 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_29350 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_29919 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_30317 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_33182 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_33414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_34085 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_36579 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_37666 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_38048 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_40566 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_40853 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_41335 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_41697 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
CC GO:0008290 F-actin capping protein complex IEP Neighborhood
BP GO:0010639 negative regulation of organelle organization IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
BP GO:0030834 regulation of actin filament depolymerization IEP Neighborhood
BP GO:0030835 negative regulation of actin filament depolymerization IEP Neighborhood
BP GO:0030837 negative regulation of actin filament polymerization IEP Neighborhood
BP GO:0031333 negative regulation of protein complex assembly IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032272 negative regulation of protein polymerization IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0043242 negative regulation of protein complex disassembly IEP Neighborhood
BP GO:0043244 regulation of protein complex disassembly IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0051016 barbed-end actin filament capping IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051129 negative regulation of cellular component organization IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051494 negative regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051693 actin filament capping IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
BP GO:1901879 regulation of protein depolymerization IEP Neighborhood
BP GO:1901880 negative regulation of protein depolymerization IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1902904 negative regulation of supramolecular fiber organization IEP Neighborhood
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 136 186
IPR001584 Integrase_cat-core 200 291
No external refs found!