Gb_28337

Description : MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica (sp|q6eu39|mads6_orysj : 172.0)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000791 (SeedPlants) Phylogenetic Tree(s): OG_06_0000791_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_28337
Cluster	HCCA: Cluster_246

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00218870	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
AMTR_s00002p00262760	evm_27.TU.AmTr_v1...	No description available	0.02	Archaeplastida
AMTR_s00021p00254030	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00071p00193200	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00089p00081270	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00140p00045380	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT1G71692	XAL1, AGL12	AGAMOUS-like 12	0.03	Archaeplastida
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT2G45650	AGL6	AGAMOUS-like 6	0.04	Archaeplastida
AT3G02310	AGL4, SEP2	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT3G54340	AP3, ATAP3	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT4G11880	AGL14	AGAMOUS-like 14	0.03	Archaeplastida
AT4G18960	AG	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT4G24540	AGL24	AGAMOUS-like 24	0.03	Archaeplastida
AT5G10140	FLC, AGL25, FLF	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT5G15800	AGL2, SEP1	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT5G20240	PI	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
GSVIVT01008139001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01008806001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
GSVIVT01009815001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01010221001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01012110001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01022182001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01026207001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01027579001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01033253001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
GSVIVT01035477001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
Gb_12778	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os01g66030.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os03g11614.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os03g54170.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os04g23910.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os06g11970.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os06g22760.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os06g23950.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os06g23980.1	No alias	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os09g02780.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_10289256g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_10432817g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_10434339g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.03	Archaeplastida
MA_175522g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_20467g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_20467g0020	No alias	MADS-box transcription factor 6 OS=Oryza sativa subsp....	0.03	Archaeplastida
MA_25342g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_333471g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_51624g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_5917g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_6279308g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_629987g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.03	Archaeplastida
MA_78010g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_951956g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_95674g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_9841429g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Pp3c16_19170V3.1	No alias	AGAMOUS-like 61	0.03	Archaeplastida
Pp3c17_13070V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Pp3c25_6940V3.1	No alias	AGAMOUS-like 62	0.03	Archaeplastida
Smo121275	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
Solyc01g106700.3.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc01g106710.1.1	No alias	component MED19 of head module of MEDIATOR transcription...	0.04	Archaeplastida
Solyc02g065730.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc02g071730.4.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc02g084630.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc02g091550.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc04g005320.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc04g081000.3.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Solyc08g067230.4.1	No alias	No annotation	0.03	Archaeplastida
Solyc08g080100.4.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc10g044965.1.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc10g080030.2.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc11g010570.2.1	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Solyc11g032100.2.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc12g056460.3.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e000846_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e003667_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e005705_P004	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e010125_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e016529_P004	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e019057_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e023236_P005	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e027031_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e027034_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e030187_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e030373_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e031267_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e032487_P001	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
Zm00001e034629_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e036422_P002	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
Zm00001e038096_P002	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e038716_P004	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	Neighborhood
MF	GO:0008171	O-methyltransferase activity	IEP	Neighborhood
BP	GO:0015994	chlorophyll metabolic process	IEP	Neighborhood
BP	GO:0015996	chlorophyll catabolic process	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016843	amine-lyase activity	IEP	Neighborhood
MF	GO:0016844	strictosidine synthase activity	IEP	Neighborhood
BP	GO:0030258	lipid modification	IEP	Neighborhood
BP	GO:0030259	lipid glycosylation	IEP	Neighborhood
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Neighborhood
BP	GO:0033015	tetrapyrrole catabolic process	IEP	Neighborhood
BP	GO:0042440	pigment metabolic process	IEP	Neighborhood
BP	GO:0046149	pigment catabolic process	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
MF	GO:0047746	chlorophyllase activity	IEP	Neighborhood
BP	GO:0048518	positive regulation of biological process	IEP	Neighborhood
BP	GO:0048580	regulation of post-embryonic development	IEP	Neighborhood
BP	GO:0048582	positive regulation of post-embryonic development	IEP	Neighborhood
BP	GO:0050793	regulation of developmental process	IEP	Neighborhood
BP	GO:0051094	positive regulation of developmental process	IEP	Neighborhood
BP	GO:0051187	cofactor catabolic process	IEP	Neighborhood
BP	GO:0051239	regulation of multicellular organismal process	IEP	Neighborhood
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:2000026	regulation of multicellular organismal development	IEP	Neighborhood
BP	GO:2000038	regulation of stomatal complex development	IEP	Neighborhood
BP	GO:2000123	positive regulation of stomatal complex development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	14	101

External Links

No external refs found!

Gb_28337

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation