1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_30039

Gb_30039


Description : Pumilio homolog 1 OS=Arabidopsis thaliana (sp|q9zw07|pum1_arath : 437.0)


Gene families : OG0000536 (Archaeplastida) Phylogenetic Tree(s): OG0000536_tree ,
OG_05_0000342 (LandPlants) Phylogenetic Tree(s): OG_05_0000342_tree ,
OG_06_0000990 (SeedPlants) Phylogenetic Tree(s): OG_06_0000990_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_30039
Cluster HCCA: Cluster_318

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00251030 evm_27.TU.AmTr_v1... Pumilio homolog 2 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT3G20250 PUM5, APUM5 pumilio 5 0.03 Archaeplastida
GSVIVT01016236001 No alias Pumilio homolog 4 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01016507001 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.08 Archaeplastida
GSVIVT01029553001 No alias Pumilio homolog 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
MA_10159883g0010 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_10434828g0010 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_42218g0010 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Pp3c8_2770V3.1 No alias pumilio 1 0.03 Archaeplastida
Zm00001e023593_P002 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR012940 NABP 337 754
IPR001313 Pumilio_RNA-bd_rpt 792 824
IPR001313 Pumilio_RNA-bd_rpt 755 788
No external refs found!