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  5. Gb_31465

Gb_31465


Description : Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana (sp|q9lic3|pp227_arath : 461.0)


Gene families : OG0009780 (Archaeplastida) Phylogenetic Tree(s): OG0009780_tree ,
OG_05_0012916 (LandPlants) Phylogenetic Tree(s): OG_05_0012916_tree ,
OG_06_0012950 (SeedPlants) Phylogenetic Tree(s): OG_06_0012950_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_31465
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AT1G09190 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Solyc03g006990.1.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.05 Archaeplastida
Zm00001e002394_P001 No alias Pentatricopeptide repeat-containing protein At2g21090... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Neighborhood
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006006 glucose metabolic process IEP Neighborhood
BP GO:0006094 gluconeogenesis IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0019319 hexose biosynthetic process IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0046364 monosaccharide biosynthetic process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 569 625
IPR002885 Pentatricopeptide_repeat 251 283
IPR002885 Pentatricopeptide_repeat 462 486
IPR002885 Pentatricopeptide_repeat 286 334
IPR002885 Pentatricopeptide_repeat 387 436
IPR002885 Pentatricopeptide_repeat 154 202
No external refs found!