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  5. AT2G46900

AT2G46900


Description : CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink).


Gene families : OG0006553 (Archaeplastida) Phylogenetic Tree(s): OG0006553_tree ,
OG_05_0008745 (LandPlants) Phylogenetic Tree(s): OG_05_0008745_tree ,
OG_06_0011474 (SeedPlants) Phylogenetic Tree(s): OG_06_0011474_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G46900
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cre11.g467639 No alias No description available 0.02 Archaeplastida
LOC_Os09g33970.1 No alias component RQC1 of Ribosome-associated Quality Control... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0004595 pantetheine-phosphate adenylyltransferase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005673 transcription factor TFIIE complex IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006140 regulation of nucleotide metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006625 protein targeting to peroxisome IEP Neighborhood
BP GO:0006635 fatty acid beta-oxidation IEP Neighborhood
BP GO:0006730 one-carbon metabolic process IEP Neighborhood
BP GO:0007031 peroxisome organization IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
MF GO:0008970 phospholipase A1 activity IEP Neighborhood
BP GO:0009582 detection of abiotic stimulus IEP Neighborhood
BP GO:0009590 detection of gravity IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009629 response to gravity IEP Neighborhood
BP GO:0009630 gravitropism IEP Neighborhood
BP GO:0009648 photoperiodism IEP Neighborhood
BP GO:0009660 amyloplast organization IEP Neighborhood
BP GO:0009959 negative gravitropism IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0010101 post-embryonic root morphogenesis IEP Neighborhood
BP GO:0010102 lateral root morphogenesis IEP Neighborhood
BP GO:0010262 somatic embryogenesis IEP Neighborhood
BP GO:0015919 peroxisomal membrane transport IEP Neighborhood
BP GO:0015936 coenzyme A metabolic process IEP Neighborhood
BP GO:0015937 coenzyme A biosynthetic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP Neighborhood
BP GO:0016558 protein import into peroxisome matrix IEP Neighborhood
CC GO:0016602 CCAAT-binding factor complex IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0019395 fatty acid oxidation IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
BP GO:0030808 regulation of nucleotide biosynthetic process IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0043574 peroxisomal transport IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0045037 protein import into chloroplast stroma IEP Neighborhood
BP GO:0046777 protein autophosphorylation IEP Neighborhood
BP GO:0048571 long-day photoperiodism IEP Neighborhood
BP GO:0048573 photoperiodism, flowering IEP Neighborhood
BP GO:0048574 long-day photoperiodism, flowering IEP Neighborhood
BP GO:0048578 positive regulation of long-day photoperiodism, flowering IEP Neighborhood
BP GO:0048586 regulation of long-day photoperiodism, flowering IEP Neighborhood
BP GO:0051196 regulation of coenzyme metabolic process IEP Neighborhood
BP GO:0055046 microgametogenesis IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0065002 intracellular protein transmembrane transport IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
MF GO:0070696 transmembrane receptor protein serine/threonine kinase binding IEP Neighborhood
BP GO:0071806 protein transmembrane transport IEP Neighborhood
BP GO:0072662 protein localization to peroxisome IEP Neighborhood
BP GO:0072663 establishment of protein localization to peroxisome IEP Neighborhood
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Neighborhood
BP GO:0080020 regulation of coenzyme A biosynthetic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
BP GO:1900371 regulation of purine nucleotide biosynthetic process IEP Neighborhood
BP GO:1900542 regulation of purine nucleotide metabolic process IEP Neighborhood
BP GO:2000028 regulation of photoperiodism, flowering IEP Neighborhood
InterPro domains Description Start Stop
IPR006994 TCF25 226 553
No external refs found!