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  5. Gb_34582

Gb_34582


Description : component RPS13 of SSU proteome


Gene families : OG0001993 (Archaeplastida) Phylogenetic Tree(s): OG0001993_tree ,
OG_05_0001936 (LandPlants) Phylogenetic Tree(s): OG_05_0001936_tree ,
OG_06_0002387 (SeedPlants) Phylogenetic Tree(s): OG_06_0002387_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_34582
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00029190 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
AMTR_s00109p00088200 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 Archaeplastida
AT3G60770 No alias Ribosomal protein S13/S15 0.15 Archaeplastida
AT4G00100 ATRPS13A, RPS13,... ribosomal protein S13A 0.13 Archaeplastida
Cpa|evm.model.tig00000489.15 No alias 40S ribosomal protein S13 OS=Glycine max 0.04 Archaeplastida
Cre07.g331900 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 Archaeplastida
GSVIVT01018537001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 Archaeplastida
GSVIVT01027637001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 Archaeplastida
LOC_Os07g38540.1 No alias component RPS13 of SSU proteome 0.1 Archaeplastida
LOC_Os08g02400.1 No alias component RPS13 of SSU proteome 0.15 Archaeplastida
LOC_Os08g02410.1 No alias component RPS13 of SSU proteome 0.15 Archaeplastida
MA_141232g0010 No alias component RPS13 of SSU proteome 0.1 Archaeplastida
Mp3g10940.1 No alias component RPS13 of SSU proteome 0.02 Archaeplastida
Mp4g03410.1 No alias component RPS13 of SSU proteome 0.17 Archaeplastida
Pp3c11_1100V3.1 No alias ribosomal protein S13A 0.18 Archaeplastida
Pp3c16_15220V3.1 No alias ribosomal protein S13A 0.11 Archaeplastida
Pp3c7_26720V3.1 No alias ribosomal protein S13A 0.19 Archaeplastida
Smo440805 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 Archaeplastida
Solyc01g091220.3.1 No alias component RPS13 of SSU proteome 0.15 Archaeplastida
Solyc03g083530.3.1 No alias component RPS13 of SSU proteome 0.11 Archaeplastida
Solyc05g051000.3.1 No alias component RPS13 of SSU proteome 0.14 Archaeplastida
Solyc10g018250.2.1 No alias component RPS13 of SSU proteome 0.1 Archaeplastida
Solyc11g072260.2.1 No alias component RPS13 of SSU proteome 0.11 Archaeplastida
Zm00001e021837_P003 No alias component RPS13 of SSU proteome 0.12 Archaeplastida
Zm00001e021839_P001 No alias component RPS13 of SSU proteome 0.15 Archaeplastida
Zm00001e029210_P002 No alias component RPS13 of SSU proteome 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
InterPro domains Description Start Stop
IPR000589 Ribosomal_S15 122 194
IPR012606 Ribosomal_S13/S15_N 49 108
No external refs found!