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  5. AT3G02540

AT3G02540 (RAD23-3, RAD23C)


Aliases : RAD23-3, RAD23C

Description : Rad23 UV excision repair protein family


Gene families : OG0001284 (Archaeplastida) Phylogenetic Tree(s): OG0001284_tree ,
OG_05_0001166 (LandPlants) Phylogenetic Tree(s): OG_05_0001166_tree ,
OG_06_0001263 (SeedPlants) Phylogenetic Tree(s): OG_06_0001263_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G02540
Cluster HCCA: Cluster_195


Type GO Term Name Evidence Source
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
MF GO:0043130 ubiquitin binding IDA Interproscan
MF GO:0070628 proteasome binding IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
CC GO:0000306 extrinsic component of vacuolar membrane IEP Neighborhood
BP GO:0000719 photoreactive repair IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003826 alpha-ketoacid dehydrogenase activity IEP Neighborhood
MF GO:0004040 amidase activity IEP Neighborhood
MF GO:0004147 dihydrolipoamide branched chain acyltransferase activity IEP Neighborhood
MF GO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEP Neighborhood
MF GO:0004470 malic enzyme activity IEP Neighborhood
MF GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004738 pyruvate dehydrogenase activity IEP Neighborhood
MF GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity IEP Neighborhood
MF GO:0004743 pyruvate kinase activity IEP Neighborhood
MF GO:0004802 transketolase activity IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006006 glucose metabolic process IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006094 gluconeogenesis IEP Neighborhood
BP GO:0006108 malate metabolic process IEP Neighborhood
BP GO:0006163 purine nucleotide metabolic process IEP Neighborhood
BP GO:0006290 pyrimidine dimer repair IEP Neighborhood
BP GO:0006595 polyamine metabolic process IEP Neighborhood
BP GO:0006598 polyamine catabolic process IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0009150 purine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009646 response to absence of light IEP Neighborhood
BP GO:0009743 response to carbohydrate IEP Neighborhood
BP GO:0009744 response to sucrose IEP Neighborhood
BP GO:0009746 response to hexose IEP Neighborhood
BP GO:0009750 response to fructose IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010351 lithium ion transport IEP Neighborhood
BP GO:0010353 response to trehalose IEP Neighborhood
BP GO:0010431 seed maturation IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0016052 carbohydrate catabolic process IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
BP GO:0016125 sterol metabolic process IEP Neighborhood
BP GO:0016126 sterol biosynthetic process IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016417 S-acyltransferase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016615 malate dehydrogenase activity IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016652 oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor IEP Neighborhood
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0019319 hexose biosynthetic process IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
MF GO:0030523 dihydrolipoamide S-acyltransferase activity IEP Neighborhood
MF GO:0030955 potassium ion binding IEP Neighborhood
CC GO:0031312 extrinsic component of organelle membrane IEP Neighborhood
MF GO:0031420 alkali metal ion binding IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032957 inositol trisphosphate metabolic process IEP Neighborhood
BP GO:0034284 response to monosaccharide IEP Neighborhood
BP GO:0034285 response to disaccharide IEP Neighborhood
MF GO:0034593 phosphatidylinositol bisphosphate phosphatase activity IEP Neighborhood
MF GO:0034595 phosphatidylinositol phosphate 5-phosphatase activity IEP Neighborhood
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0043617 cellular response to sucrose starvation IEP Neighborhood
BP GO:0043648 dicarboxylic acid metabolic process IEP Neighborhood
MF GO:0043864 indoleacetamide hydrolase activity IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:0046164 alcohol catabolic process IEP Neighborhood
BP GO:0046174 polyol catabolic process IEP Neighborhood
BP GO:0046364 monosaccharide biosynthetic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:0046434 organophosphate catabolic process IEP Neighborhood
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Neighborhood
BP GO:0046855 inositol phosphate dephosphorylation IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048609 multicellular organismal reproductive process IEP Neighborhood
BP GO:0048868 pollen tube development IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
MF GO:0050897 cobalt ion binding IEP Neighborhood
BP GO:0051259 protein complex oligomerization IEP Neighborhood
BP GO:0051260 protein homooligomerization IEP Neighborhood
BP GO:0051262 protein tetramerization IEP Neighborhood
BP GO:0051289 protein homotetramerization IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0052866 phosphatidylinositol phosphate phosphatase activity IEP Neighborhood
BP GO:0071545 inositol phosphate catabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
BP GO:0072521 purine-containing compound metabolic process IEP Neighborhood
MF GO:0106019 phosphatidylinositol-4,5-bisphosphate phosphatase activity IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901616 organic hydroxy compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 76
IPR015360 XPC-bd 290 345
IPR015940 UBA 187 225
IPR015940 UBA 375 410
No external refs found!