Gb_37602

Description : basal transcription factor (Sigma)

Gene families : OG0000365 (Archaeplastida) Phylogenetic Tree(s): OG0000365_tree ,
OG_05_0001853 (LandPlants) Phylogenetic Tree(s): OG_05_0001853_tree ,
OG_06_0005911 (SeedPlants) Phylogenetic Tree(s): OG_06_0005911_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_37602
Cluster	HCCA: Cluster_250

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00072720	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00011p00258380	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00011p00266100	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.07	Archaeplastida
AMTR_s00025p00248060	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AT1G08540	ATSIG1, SIGB,...	RNApolymerase sigma subunit 2	0.06	Archaeplastida
AT1G64860	SIGB, SIG2,...	sigma factor A	0.02	Archaeplastida
AT2G36990	SIGF, SIG6,...	RNApolymerase sigma-subunit F	0.07	Archaeplastida
Cre03.g194950	No alias	RNA biosynthesis.organelle...	0.01	Archaeplastida
GSVIVT01019326001	No alias	RNA biosynthesis.organelle...	0.06	Archaeplastida
GSVIVT01024261001	No alias	RNA biosynthesis.organelle...	0.04	Archaeplastida
GSVIVT01025717001	No alias	RNA biosynthesis.organelle...	0.09	Archaeplastida
GSVIVT01032193001	No alias	RNA biosynthesis.organelle...	0.03	Archaeplastida
GSVIVT01035330001	No alias	RNA biosynthesis.organelle...	0.04	Archaeplastida
LOC_Os05g50930.1	No alias	basal transcription factor (Sigma)	0.04	Archaeplastida
LOC_Os08g06630.1	No alias	basal transcription factor (Sigma)	0.04	Archaeplastida
MA_10429585g0010	No alias	basal transcription factor (Sigma)	0.05	Archaeplastida
Mp4g13380.1	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
Pp3c14_22330V3.1	No alias	RNApolymerase sigma subunit 2	0.03	Archaeplastida
Pp3c1_36580V3.1	No alias	RNApolymerase sigma subunit 2	0.02	Archaeplastida
Smo117159	No alias	RNA biosynthesis.organelle...	0.05	Archaeplastida
Solyc01g081490.3.1	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
Solyc06g072710.3.1	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
Solyc08g065970.3.1	No alias	basal transcription factor (Sigma)	0.02	Archaeplastida
Solyc09g008040.3.1	No alias	basal transcription factor (Sigma)	0.04	Archaeplastida
Zm00001e001198_P005	No alias	basal transcription factor (Sigma)	0.05	Archaeplastida
Zm00001e021420_P001	No alias	basal transcription factor (Sigma)	0.05	Archaeplastida
Zm00001e021683_P001	No alias	basal transcription factor (Sigma)	0.02	Archaeplastida
Zm00001e040174_P003	No alias	no hits & (original description: none)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription, initiation	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0004222	metalloendopeptidase activity	IEP	Neighborhood
MF	GO:0004618	phosphoglycerate kinase activity	IEP	Neighborhood
MF	GO:0005244	voltage-gated ion channel activity	IEP	Neighborhood
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Neighborhood
MF	GO:0005253	anion channel activity	IEP	Neighborhood
MF	GO:0005254	chloride channel activity	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	Neighborhood
BP	GO:0006821	chloride transport	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
MF	GO:0008308	voltage-gated anion channel activity	IEP	Neighborhood
MF	GO:0008509	anion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015994	chlorophyll metabolic process	IEP	Neighborhood
BP	GO:0015996	chlorophyll catabolic process	IEP	Neighborhood
MF	GO:0016774	phosphotransferase activity, carboxyl group as acceptor	IEP	Neighborhood
BP	GO:0017038	protein import	IEP	Neighborhood
BP	GO:0019439	aromatic compound catabolic process	IEP	Neighborhood
MF	GO:0022832	voltage-gated channel activity	IEP	Neighborhood
MF	GO:0022836	gated channel activity	IEP	Neighborhood
MF	GO:0022839	ion gated channel activity	IEP	Neighborhood
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Neighborhood
BP	GO:0033015	tetrapyrrole catabolic process	IEP	Neighborhood
BP	GO:0042440	pigment metabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Neighborhood
BP	GO:0046149	pigment catabolic process	IEP	Neighborhood
BP	GO:0046700	heterocycle catabolic process	IEP	Neighborhood
MF	GO:0047746	chlorophyllase activity	IEP	Neighborhood
BP	GO:0051186	cofactor metabolic process	IEP	Neighborhood
BP	GO:0051187	cofactor catabolic process	IEP	Neighborhood
MF	GO:0071949	FAD binding	IEP	Neighborhood
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007630	RNA_pol_sigma70_r4	527	579
IPR007624	RNA_pol_sigma70_r3	438	514
IPR007627	RNA_pol_sigma70_r2	359	428

External Links

No external refs found!

Gb_37602

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation