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Description : Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana (sp|q67xl4|y3544_arath : 123.0)
Gene families : OG0001381 (Archaeplastida) Phylogenetic Tree(s): OG0001381_tree ,
OG_05_0000914 (LandPlants) Phylogenetic Tree(s): OG_05_0000914_tree ,
OG_06_0005833 (SeedPlants) Phylogenetic Tree(s): OG_06_0005833_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_39033 | |
| Cluster | HCCA: Cluster_335 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G27550 | No alias | RNA-binding CRS1 / YhbY (CRM) domain protein | 0.05 | Archaeplastida | |
| AT4G13070 | No alias | RNA-binding CRS1 / YhbY (CRM) domain protein | 0.03 | Archaeplastida | |
| MA_10427237g0020 | No alias | Uncharacterized CRM domain-containing protein At3g25440,... | 0.02 | Archaeplastida | |
| Mp2g03710.1 | No alias | Uncharacterized CRM domain-containing protein At3g25440,... | 0.02 | Archaeplastida | |
| Pp3c3_29500V3.1 | No alias | RNA-binding CRS1 / YhbY (CRM) domain protein | 0.04 | Archaeplastida | |
| Solyc06g082990.4.1 | No alias | Uncharacterized CRM domain-containing protein At3g25440,... | 0.03 | Archaeplastida | |
| Solyc07g047900.3.1 | No alias | Uncharacterized CRM domain-containing protein At3g25440,... | 0.04 | Archaeplastida | |
| Solyc09g005270.3.1 | No alias | Uncharacterized CRM domain-containing protein At3g25440,... | 0.03 | Archaeplastida | |
| Zm00001e007721_P001 | No alias | Uncharacterized CRM domain-containing protein At3g25440,... | 0.02 | Archaeplastida | |
| Zm00001e027517_P001 | No alias | Uncharacterized CRM domain-containing protein At3g25440,... | 0.04 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
| MF | GO:0003682 | chromatin binding | IEP | Neighborhood |
| MF | GO:0004386 | helicase activity | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Neighborhood |
| BP | GO:0006334 | nucleosome assembly | IEP | Neighborhood |
| BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006497 | protein lipidation | IEP | Neighborhood |
| BP | GO:0006505 | GPI anchor metabolic process | IEP | Neighborhood |
| BP | GO:0006506 | GPI anchor biosynthetic process | IEP | Neighborhood |
| BP | GO:0006643 | membrane lipid metabolic process | IEP | Neighborhood |
| BP | GO:0006644 | phospholipid metabolic process | IEP | Neighborhood |
| BP | GO:0006650 | glycerophospholipid metabolic process | IEP | Neighborhood |
| BP | GO:0006661 | phosphatidylinositol biosynthetic process | IEP | Neighborhood |
| BP | GO:0006664 | glycolipid metabolic process | IEP | Neighborhood |
| MF | GO:0008375 | acetylglucosaminyltransferase activity | IEP | Neighborhood |
| BP | GO:0008654 | phospholipid biosynthetic process | IEP | Neighborhood |
| BP | GO:0009247 | glycolipid biosynthetic process | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
| MF | GO:0017176 | phosphatidylinositol N-acetylglucosaminyltransferase activity | IEP | Neighborhood |
| CC | GO:0034457 | Mpp10 complex | IEP | Neighborhood |
| BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
| BP | GO:0034728 | nucleosome organization | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0044452 | nucleolar part | IEP | Neighborhood |
| BP | GO:0045017 | glycerolipid biosynthetic process | IEP | Neighborhood |
| BP | GO:0046467 | membrane lipid biosynthetic process | IEP | Neighborhood |
| BP | GO:0046474 | glycerophospholipid biosynthetic process | IEP | Neighborhood |
| BP | GO:0046486 | glycerolipid metabolic process | IEP | Neighborhood |
| BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | Neighborhood |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Neighborhood |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:1903509 | liposaccharide metabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001890 | RNA-binding_CRM | 154 | 238 |
| No external refs found! |