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  5. Gb_39860

Gb_39860


Description : transcription factor (HUA2)


Gene families : OG0001669 (Archaeplastida) Phylogenetic Tree(s): OG0001669_tree ,
OG_05_0001314 (LandPlants) Phylogenetic Tree(s): OG_05_0001314_tree ,
OG_06_0004134 (SeedPlants) Phylogenetic Tree(s): OG_06_0004134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39860
Cluster HCCA: Cluster_324

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00079800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HUA2... 0.12 Archaeplastida
AT3G63070 No alias Tudor/PWWP/MBT domain-containing protein 0.11 Archaeplastida
AT5G23150 HUA2 Tudor/PWWP/MBT domain-containing protein 0.04 Archaeplastida
GSVIVT01011100001 No alias RNA biosynthesis.transcriptional activation.HUA2... 0.06 Archaeplastida
GSVIVT01012049001 No alias RNA biosynthesis.transcriptional activation.HUA2... 0.07 Archaeplastida
LOC_Os03g24339.1 No alias transcription factor (HUA2) 0.07 Archaeplastida
LOC_Os07g46180.1 No alias transcription factor (HUA2) 0.06 Archaeplastida
LOC_Os08g01054.2 No alias transcription factor (HUA2) 0.07 Archaeplastida
MA_3338g0010 No alias transcription factor (HUA2) 0.06 Archaeplastida
MA_9328225g0010 No alias Protein HUA2-LIKE 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_9359526g0010 No alias no hits & (original description: none) 0.1 Archaeplastida
Mp8g15320.1 No alias transcription factor (HUA2) 0.07 Archaeplastida
Pp3c11_11950V3.1 No alias Tudor/PWWP/MBT domain-containing protein 0.06 Archaeplastida
Pp3c7_13020V3.1 No alias Tudor/PWWP/MBT domain-containing protein 0.06 Archaeplastida
Pp3c7_13060V3.1 No alias Tudor/PWWP/MBT domain-containing protein 0.06 Archaeplastida
Smo404055 No alias RNA biosynthesis.transcriptional activation.HUA2... 0.06 Archaeplastida
Smo414202 No alias RNA biosynthesis.transcriptional activation.HUA2... 0.04 Archaeplastida
Solyc02g014115.1.1 No alias transcription factor (HUA2) 0.03 Archaeplastida
Solyc02g014130.3.1 No alias ENHANCER OF AG-4 protein 2 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc09g064840.4.1 No alias transcription factor (HUA2) 0.09 Archaeplastida
Zm00001e001720_P002 No alias transcription factor (HUA2) 0.08 Archaeplastida
Zm00001e024276_P001 No alias transcription factor (HUA2) 0.05 Archaeplastida
Zm00001e029104_P001 No alias transcription factor (HUA2) 0.06 Archaeplastida
Zm00001e038169_P004 No alias transcription factor (HUA2) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004819 glutamine-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000313 PWWP_dom 21 106
IPR006903 RNA_pol_II-bd 1657 1723
No external refs found!