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  5. AT3G09080

AT3G09080


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG0008318 (Archaeplastida) Phylogenetic Tree(s): OG0008318_tree ,
OG_05_0009335 (LandPlants) Phylogenetic Tree(s): OG_05_0009335_tree ,
OG_06_0011895 (SeedPlants) Phylogenetic Tree(s): OG_06_0011895_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G09080
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00212130 evm_27.TU.AmTr_v1... No description available 0.06 Archaeplastida
GSVIVT01034011001 No alias No description available 0.11 Archaeplastida
MA_260364g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_475617g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c9_8840V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Archaeplastida
Smo404876 No alias No description available 0.06 Archaeplastida
Solyc09g013160.3.1 No alias no hits & (original description: none) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000086 G2/M transition of mitotic cell cycle IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000278 mitotic cell cycle IEP Neighborhood
BP GO:0000280 nuclear division IEP Neighborhood
BP GO:0000723 telomere maintenance IEP Neighborhood
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
BP GO:0000911 cytokinesis by cell plate formation IEP Neighborhood
BP GO:0000912 assembly of actomyosin apparatus involved in cytokinesis IEP Neighborhood
BP GO:0000914 phragmoplast assembly IEP Neighborhood
BP GO:0001558 regulation of cell growth IEP Neighborhood
BP GO:0001578 microtubule bundle formation IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0004839 ubiquitin activating enzyme activity IEP Neighborhood
MF GO:0005302 L-tyrosine transmembrane transporter activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005819 spindle IEP Neighborhood
CC GO:0005828 kinetochore microtubule IEP Neighborhood
CC GO:0005876 spindle microtubule IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006346 methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007005 mitochondrion organization IEP Neighborhood
BP GO:0007006 mitochondrial membrane organization IEP Neighborhood
BP GO:0007007 inner mitochondrial membrane organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
BP GO:0007088 regulation of mitotic nuclear division IEP Neighborhood
BP GO:0007113 endomitotic cell cycle IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
BP GO:0007135 meiosis II IEP Neighborhood
BP GO:0007140 male meiotic nuclear division IEP Neighborhood
BP GO:0007142 male meiosis II IEP Neighborhood
BP GO:0007276 gamete generation IEP Neighborhood
BP GO:0007346 regulation of mitotic cell cycle IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
MF GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009524 phragmoplast IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
CC GO:0009574 preprophase band IEP Neighborhood
BP GO:0009652 thigmotropism IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009934 regulation of meristem structural organization IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0010332 response to gamma radiation IEP Neighborhood
BP GO:0010374 stomatal complex development IEP Neighborhood
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0015173 aromatic amino acid transmembrane transporter activity IEP Neighborhood
MF GO:0015179 L-amino acid transmembrane transporter activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016572 histone phosphorylation IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022403 cell cycle phase IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Neighborhood
BP GO:0022604 regulation of cell morphogenesis IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
BP GO:0030865 cortical cytoskeleton organization IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0032204 regulation of telomere maintenance IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032506 cytokinetic process IEP Neighborhood
BP GO:0032875 regulation of DNA endoreduplication IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
CC GO:0033597 mitotic checkpoint complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0040020 regulation of meiotic nuclear division IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0042023 DNA endoreduplication IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043247 telomere maintenance in response to DNA damage IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
BP GO:0044770 cell cycle phase transition IEP Neighborhood
BP GO:0044772 mitotic cell cycle phase transition IEP Neighborhood
BP GO:0044786 cell cycle DNA replication IEP Neighborhood
BP GO:0044839 cell cycle G2/M phase transition IEP Neighborhood
BP GO:0044848 biological phase IEP Neighborhood
BP GO:0045039 protein import into mitochondrial inner membrane IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048285 organelle fission IEP Neighborhood
BP GO:0048449 floral organ formation IEP Neighborhood
BP GO:0048451 petal formation IEP Neighborhood
BP GO:0048453 sepal formation IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048638 regulation of developmental growth IEP Neighborhood
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051322 anaphase IEP Neighborhood
BP GO:0051445 regulation of meiotic cell cycle IEP Neighborhood
BP GO:0051510 regulation of unidimensional cell growth IEP Neighborhood
BP GO:0051567 histone H3-K9 methylation IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0051783 regulation of nuclear division IEP Neighborhood
BP GO:0055046 microgametogenesis IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0061647 histone H3-K9 modification IEP Neighborhood
BP GO:0061983 meiosis II cell cycle process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0080175 phragmoplast microtubule organization IEP Neighborhood
BP GO:0090151 establishment of protein localization to mitochondrial membrane IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Neighborhood
BP GO:0090558 plant epidermis development IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
BP GO:0140013 meiotic nuclear division IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901987 regulation of cell cycle phase transition IEP Neighborhood
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Neighborhood
BP GO:1902407 assembly of actomyosin apparatus involved in mitotic cytokinesis IEP Neighborhood
BP GO:1902410 mitotic cytokinetic process IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1905393 plant organ formation IEP Neighborhood
BP GO:1990542 mitochondrial transmembrane transport IEP Neighborhood
MF GO:1990939 ATP-dependent microtubule motor activity IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 294 341
IPR001680 WD40_repeat 609 640
No external refs found!