AT3G13860 (HSP60-3A)

Aliases : HSP60-3A

Description : heat shock protein 60-3A

Gene families : OG0000342 (Archaeplastida) Phylogenetic Tree(s): OG0000342_tree ,
OG_05_0001839 (LandPlants) Phylogenetic Tree(s): OG_05_0001839_tree ,
OG_06_0002105 (SeedPlants) Phylogenetic Tree(s): OG_06_0002105_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G13860
Cluster	HCCA: Cluster_109

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00001269.7	No alias	External stimuli response.temperature.Hsp...	0.02	Archaeplastida
Cpa\|evm.model.tig00020943.69	No alias	RuBisCO large subunit-binding protein subunit alpha,...	0.02	Archaeplastida
Cre06.g309100	No alias	External stimuli response.temperature.Hsp...	0.04	Archaeplastida
GSVIVT01012098001	No alias	External stimuli response.temperature.Hsp...	0.03	Archaeplastida
GSVIVT01016859001	No alias	External stimuli response.temperature.Hsp...	0.06	Archaeplastida
GSVIVT01017032001	No alias	External stimuli response.temperature.Hsp...	0.05	Archaeplastida
GSVIVT01029025001	No alias	External stimuli response.temperature.Hsp...	0.05	Archaeplastida
GSVIVT01031526001	No alias	External stimuli response.temperature.Hsp...	0.03	Archaeplastida
Gb_32466	No alias	subunit alpha of Cpn60 chaperonin complex. component...	0.07	Archaeplastida
Gb_37654	No alias	chaperone (Hsp60)	0.05	Archaeplastida
LOC_Os05g46290.1	No alias	chaperone (Hsp60)	0.05	Archaeplastida
MA_10436324g0010	No alias	chaperone (Hsp60)	0.06	Archaeplastida
MA_13240g0020	No alias	no hits & (original description: none)	0.05	Archaeplastida
Mp5g20470.1	No alias	subunit alpha of Cpn60 chaperonin complex. component...	0.02	Archaeplastida
Mp6g16880.1	No alias	chaperone (Hsp60)	0.05	Archaeplastida
Pp3c16_4660V3.1	No alias	chaperonin 60 beta	0.03	Archaeplastida
Pp3c24_12180V3.1	No alias	chaperonin-60alpha	0.04	Archaeplastida
Pp3c26_2180V3.1	No alias	heat shock protein 60	0.02	Archaeplastida
Pp3c4_22500V3.1	No alias	heat shock protein 60	0.04	Archaeplastida
Smo165043	No alias	External stimuli response.temperature.Hsp...	0.04	Archaeplastida
Smo405358	No alias	External stimuli response.temperature.Hsp...	0.03	Archaeplastida
Solyc01g028810.3.1	No alias	subunit beta of Cpn60 chaperonin complex. component...	0.03	Archaeplastida
Solyc03g121640.3.1	No alias	chaperone (Hsp60)	0.07	Archaeplastida
Zm00001e004641_P001	No alias	chaperone (Hsp60)	0.08	Archaeplastida
Zm00001e012733_P002	No alias	chaperone (Hsp60)	0.09	Archaeplastida
Zm00001e025409_P001	No alias	subunit beta of Cpn60 chaperonin complex. component...	0.05	Archaeplastida
Zm00001e029825_P001	No alias	subunit beta of Cpn60 chaperonin complex. component...	0.03	Archaeplastida
Zm00001e032273_P004	No alias	chaperone (Hsp60)	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044437	vacuolar part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098805	whole membrane	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Neighborhood
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0000175	3'-5'-exoribonuclease activity	IEP	Neighborhood
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Neighborhood
BP	GO:0000469	cleavage involved in rRNA processing	IEP	Neighborhood
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	Neighborhood
BP	GO:0000741	karyogamy	IEP	Neighborhood
BP	GO:0000957	mitochondrial RNA catabolic process	IEP	Neighborhood
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Neighborhood
BP	GO:0000963	mitochondrial RNA processing	IEP	Neighborhood
BP	GO:0001510	RNA methylation	IEP	Neighborhood
BP	GO:0003006	developmental process involved in reproduction	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003727	single-stranded RNA binding	IEP	Neighborhood
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0004532	exoribonuclease activity	IEP	Neighborhood
MF	GO:0004588	orotate phosphoribosyltransferase activity	IEP	Neighborhood
MF	GO:0004590	orotidine-5'-phosphate decarboxylase activity	IEP	Neighborhood
MF	GO:0004654	polyribonucleotide nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Neighborhood
MF	GO:0004824	lysine-tRNA ligase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
MF	GO:0005527	macrolide binding	IEP	Neighborhood
MF	GO:0005528	FK506 binding	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
CC	GO:0005654	nucleoplasm	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
CC	GO:0005732	small nucleolar ribonucleoprotein complex	IEP	Neighborhood
CC	GO:0005737	cytoplasm	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
CC	GO:0005829	cytosol	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
BP	GO:0005996	monosaccharide metabolic process	IEP	Neighborhood
BP	GO:0006006	glucose metabolic process	IEP	Neighborhood
BP	GO:0006094	gluconeogenesis	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006163	purine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006405	RNA export from nucleus	IEP	Neighborhood
BP	GO:0006406	mRNA export from nucleus	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Neighborhood
BP	GO:0006430	lysyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
BP	GO:0006553	lysine metabolic process	IEP	Neighborhood
BP	GO:0006606	protein import into nucleus	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006913	nucleocytoplasmic transport	IEP	Neighborhood
BP	GO:0006954	inflammatory response	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
BP	GO:0007005	mitochondrion organization	IEP	Neighborhood
BP	GO:0007010	cytoskeleton organization	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009085	lysine biosynthetic process	IEP	Neighborhood
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Neighborhood
BP	GO:0009116	nucleoside metabolic process	IEP	Neighborhood
BP	GO:0009117	nucleotide metabolic process	IEP	Neighborhood
BP	GO:0009165	nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0009259	ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	Neighborhood
CC	GO:0009295	nucleoid	IEP	Neighborhood
BP	GO:0009314	response to radiation	IEP	Neighborhood
BP	GO:0009416	response to light stimulus	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
BP	GO:0009560	embryo sac egg cell differentiation	IEP	Neighborhood
BP	GO:0009561	megagametogenesis	IEP	Neighborhood
BP	GO:0009628	response to abiotic stimulus	IEP	Neighborhood
BP	GO:0009639	response to red or far red light	IEP	Neighborhood
BP	GO:0009640	photomorphogenesis	IEP	Neighborhood
BP	GO:0009735	response to cytokinin	IEP	Neighborhood
BP	GO:0009791	post-embryonic development	IEP	Neighborhood
BP	GO:0009909	regulation of flower development	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0010022	meristem determinacy	IEP	Neighborhood
BP	GO:0010219	regulation of vernalization response	IEP	Neighborhood
BP	GO:0010220	positive regulation of vernalization response	IEP	Neighborhood
BP	GO:0010467	gene expression	IEP	Neighborhood
BP	GO:0010498	proteasomal protein catabolic process	IEP	Neighborhood
BP	GO:0010582	floral meristem determinacy	IEP	Neighborhood
CC	GO:0015030	Cajal body	IEP	Neighborhood
BP	GO:0015931	nucleobase-containing compound transport	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
CC	GO:0016363	nuclear matrix	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
CC	GO:0016604	nuclear body	IEP	Neighborhood
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Neighborhood
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016874	ligase activity	IEP	Neighborhood
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Neighborhood
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
BP	GO:0017038	protein import	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0018193	peptidyl-amino acid modification	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0018208	peptidyl-proline modification	IEP	Neighborhood
BP	GO:0019318	hexose metabolic process	IEP	Neighborhood
BP	GO:0019319	hexose biosynthetic process	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
BP	GO:0019637	organophosphate metabolic process	IEP	Neighborhood
BP	GO:0019693	ribose phosphate metabolic process	IEP	Neighborhood
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0030154	cell differentiation	IEP	Neighborhood
BP	GO:0030163	protein catabolic process	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034504	protein localization to nucleus	IEP	Neighborhood
BP	GO:0034599	cellular response to oxidative stress	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
CC	GO:0042645	mitochondrial nucleoid	IEP	Neighborhood
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	Neighborhood
BP	GO:0043038	amino acid activation	IEP	Neighborhood
BP	GO:0043039	tRNA aminoacylation	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:0044281	small molecule metabolic process	IEP	Neighborhood
BP	GO:0044283	small molecule biosynthetic process	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
BP	GO:0046364	monosaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	Neighborhood
BP	GO:0046451	diaminopimelate metabolic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0048284	organelle fusion	IEP	Neighborhood
BP	GO:0048580	regulation of post-embryonic development	IEP	Neighborhood
BP	GO:0048831	regulation of shoot system development	IEP	Neighborhood
BP	GO:0048869	cellular developmental process	IEP	Neighborhood
BP	GO:0050657	nucleic acid transport	IEP	Neighborhood
BP	GO:0050658	RNA transport	IEP	Neighborhood
MF	GO:0050897	cobalt ion binding	IEP	Neighborhood
BP	GO:0051028	mRNA transport	IEP	Neighborhood
BP	GO:0051131	chaperone-mediated protein complex assembly	IEP	Neighborhood
BP	GO:0051168	nuclear export	IEP	Neighborhood
BP	GO:0051169	nuclear transport	IEP	Neighborhood
BP	GO:0051170	import into nucleus	IEP	Neighborhood
BP	GO:0051236	establishment of RNA localization	IEP	Neighborhood
BP	GO:0051239	regulation of multicellular organismal process	IEP	Neighborhood
BP	GO:0051259	protein complex oligomerization	IEP	Neighborhood
BP	GO:0051260	protein homooligomerization	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Neighborhood
BP	GO:0070407	oxidation-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Neighborhood
BP	GO:0090407	organophosphate biosynthetic process	IEP	Neighborhood
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	Neighborhood
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
BP	GO:0140053	mitochondrial gene expression	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Neighborhood
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Neighborhood
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood
BP	GO:2000026	regulation of multicellular organismal development	IEP	Neighborhood
BP	GO:2000241	regulation of reproductive process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002423	Cpn60/TCP-1	53	546

External Links

No external refs found!

AT3G13860 (HSP60-3A)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation