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  5. Zm00001e011396_P001

Zm00001e011396_P001


Description : DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica (sp|q6z4k6|rh52b_orysj : 821.0)


Gene families : OG0002046 (Archaeplastida) Phylogenetic Tree(s): OG0002046_tree ,
OG_05_0001832 (LandPlants) Phylogenetic Tree(s): OG_05_0001832_tree ,
OG_06_0001913 (SeedPlants) Phylogenetic Tree(s): OG_06_0001913_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011396_P001
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00133p00101570 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT3G58510 No alias DEA(D/H)-box RNA helicase family protein 0.07 Archaeplastida
Cre10.g427700 No alias DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.02 Archaeplastida
LOC_Os03g59050.1 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.03 Archaeplastida
LOC_Os07g10250.1 No alias DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.03 Archaeplastida
MA_137324g0010 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis... 0.03 Archaeplastida
MA_181920g0010 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.03 Archaeplastida
Pp3c2_1920V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
Solyc03g052980.3.1 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004399 histidinol dehydrogenase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 414 529
IPR011545 DEAD/DEAH_box_helicase_dom 198 378
No external refs found!