Description : RNA editing factor (OTP85)
Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e011875_P001 | |
Cluster | HCCA: Cluster_70 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00008p00153950 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.02 | Archaeplastida | |
AMTR_s00029p00204910 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g19191,... | 0.04 | Archaeplastida | |
AMTR_s00032p00219990 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | Archaeplastida | |
AMTR_s00040p00098330 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g46790,... | 0.02 | Archaeplastida | |
AMTR_s00051p00085060 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g16610... | 0.02 | Archaeplastida | |
AMTR_s00061p00127300 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g12770... | 0.02 | Archaeplastida | |
AMTR_s00065p00031420 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g33680... | 0.02 | Archaeplastida | |
AMTR_s00068p00031610 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
AT4G13650 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
AT4G18750 | DOT4 | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
GSVIVT01009407001 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.03 | Archaeplastida | |
GSVIVT01011333001 | No alias | Pentatricopeptide repeat-containing protein At1g08070,... | 0.02 | Archaeplastida | |
GSVIVT01017365001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
GSVIVT01020091001 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
GSVIVT01023971001 | No alias | Pentatricopeptide repeat-containing protein At4g35130,... | 0.03 | Archaeplastida | |
GSVIVT01036207001 | No alias | Pentatricopeptide repeat-containing protein At5g66520... | 0.03 | Archaeplastida | |
LOC_Os03g43470.1 | No alias | Pentatricopeptide repeat-containing protein At2g42920,... | 0.12 | Archaeplastida | |
LOC_Os04g39410.1 | No alias | RNA editing factor (OTP86) | 0.02 | Archaeplastida | |
LOC_Os05g12130.1 | No alias | RNA editing factor (ECD1) | 0.05 | Archaeplastida | |
LOC_Os05g49920.1 | No alias | RNA editing factor (ECB2/VAC1) | 0.05 | Archaeplastida | |
LOC_Os05g50950.1 | No alias | Pentatricopeptide repeat-containing protein At4g01030,... | 0.03 | Archaeplastida | |
LOC_Os07g02280.1 | No alias | RNA editing factor (OTP80) | 0.04 | Archaeplastida | |
LOC_Os07g07620.1 | No alias | Pentatricopeptide repeat-containing protein At5g03800... | 0.03 | Archaeplastida | |
Solyc01g095690.2.1 | No alias | Pentatricopeptide repeat-containing protein At4g01030,... | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004175 | endopeptidase activity | IEP | Neighborhood |
MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Neighborhood |
MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | Neighborhood |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Neighborhood |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | Neighborhood |
BP | GO:0016485 | protein processing | IEP | Neighborhood |
MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
MF | GO:0016829 | lyase activity | IEP | Neighborhood |
MF | GO:0016830 | carbon-carbon lyase activity | IEP | Neighborhood |
MF | GO:0016831 | carboxy-lyase activity | IEP | Neighborhood |
MF | GO:0016887 | ATPase activity | IEP | Neighborhood |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Neighborhood |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Neighborhood |
BP | GO:0051186 | cofactor metabolic process | IEP | Neighborhood |
BP | GO:0051188 | cofactor biosynthetic process | IEP | Neighborhood |
BP | GO:0051604 | protein maturation | IEP | Neighborhood |
BP | GO:0071586 | CAAX-box protein processing | IEP | Neighborhood |
No external refs found! |