| BP | GO:0000165 | MAPK cascade | IEP | Neighborhood |
| MF | GO:0000900 | translation repressor activity, mRNA regulatory element binding | IEP | Neighborhood |
| BP | GO:0002682 | regulation of immune system process | IEP | Neighborhood |
| MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Neighborhood |
| MF | GO:0004565 | beta-galactosidase activity | IEP | Neighborhood |
| MF | GO:0004871 | obsolete signal transducer activity | IEP | Neighborhood |
| CC | GO:0005773 | vacuole | IEP | Neighborhood |
| BP | GO:0006464 | cellular protein modification process | IEP | Neighborhood |
| BP | GO:0006468 | protein phosphorylation | IEP | Neighborhood |
| BP | GO:0006568 | tryptophan metabolic process | IEP | Neighborhood |
| BP | GO:0006569 | tryptophan catabolic process | IEP | Neighborhood |
| BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Neighborhood |
| BP | GO:0006586 | indolalkylamine metabolic process | IEP | Neighborhood |
| BP | GO:0006605 | protein targeting | IEP | Neighborhood |
| BP | GO:0006612 | protein targeting to membrane | IEP | Neighborhood |
| BP | GO:0006644 | phospholipid metabolic process | IEP | Neighborhood |
| BP | GO:0006650 | glycerophospholipid metabolic process | IEP | Neighborhood |
| BP | GO:0006661 | phosphatidylinositol biosynthetic process | IEP | Neighborhood |
| BP | GO:0006793 | phosphorus metabolic process | IEP | Neighborhood |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006873 | cellular ion homeostasis | IEP | Neighborhood |
| BP | GO:0006886 | intracellular protein transport | IEP | Neighborhood |
| BP | GO:0006995 | cellular response to nitrogen starvation | IEP | Neighborhood |
| BP | GO:0007602 | phototransduction | IEP | Neighborhood |
| BP | GO:0007623 | circadian rhythm | IEP | Neighborhood |
| BP | GO:0008104 | protein localization | IEP | Neighborhood |
| BP | GO:0008654 | phospholipid biosynthetic process | IEP | Neighborhood |
| BP | GO:0009063 | cellular amino acid catabolic process | IEP | Neighborhood |
| BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Neighborhood |
| BP | GO:0009074 | aromatic amino acid family catabolic process | IEP | Neighborhood |
| BP | GO:0009310 | amine catabolic process | IEP | Neighborhood |
| BP | GO:0009314 | response to radiation | IEP | Neighborhood |
| BP | GO:0009416 | response to light stimulus | IEP | Neighborhood |
| CC | GO:0009507 | chloroplast | IEP | Neighborhood |
| CC | GO:0009535 | chloroplast thylakoid membrane | IEP | Neighborhood |
| CC | GO:0009536 | plastid | IEP | Neighborhood |
| BP | GO:0009582 | detection of abiotic stimulus | IEP | Neighborhood |
| BP | GO:0009583 | detection of light stimulus | IEP | Neighborhood |
| BP | GO:0009585 | red, far-red light phototransduction | IEP | Neighborhood |
| BP | GO:0009605 | response to external stimulus | IEP | Neighborhood |
| BP | GO:0009606 | tropism | IEP | Neighborhood |
| BP | GO:0009607 | response to biotic stimulus | IEP | Neighborhood |
| BP | GO:0009617 | response to bacterium | IEP | Neighborhood |
| BP | GO:0009629 | response to gravity | IEP | Neighborhood |
| BP | GO:0009630 | gravitropism | IEP | Neighborhood |
| BP | GO:0009637 | response to blue light | IEP | Neighborhood |
| BP | GO:0009638 | phototropism | IEP | Neighborhood |
| BP | GO:0009639 | response to red or far red light | IEP | Neighborhood |
| BP | GO:0009683 | indoleacetic acid metabolic process | IEP | Neighborhood |
| BP | GO:0009684 | indoleacetic acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0009704 | de-etiolation | IEP | Neighborhood |
| BP | GO:0009755 | hormone-mediated signaling pathway | IEP | Neighborhood |
| MF | GO:0009815 | 1-aminocyclopropane-1-carboxylate oxidase activity | IEP | Neighborhood |
| BP | GO:0009850 | auxin metabolic process | IEP | Neighborhood |
| BP | GO:0009851 | auxin biosynthetic process | IEP | Neighborhood |
| BP | GO:0009862 | systemic acquired resistance, salicylic acid mediated signaling pathway | IEP | Neighborhood |
| BP | GO:0009863 | salicylic acid mediated signaling pathway | IEP | Neighborhood |
| BP | GO:0009867 | jasmonic acid mediated signaling pathway | IEP | Neighborhood |
| BP | GO:0009870 | defense response signaling pathway, resistance gene-dependent | IEP | Neighborhood |
| MF | GO:0009881 | photoreceptor activity | IEP | Neighborhood |
| MF | GO:0009882 | blue light photoreceptor activity | IEP | Neighborhood |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Neighborhood |
| BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Neighborhood |
| BP | GO:0009893 | positive regulation of metabolic process | IEP | Neighborhood |
| CC | GO:0009898 | cytoplasmic side of plasma membrane | IEP | Neighborhood |
| BP | GO:0009902 | chloroplast relocation | IEP | Neighborhood |
| BP | GO:0009903 | chloroplast avoidance movement | IEP | Neighborhood |
| BP | GO:0009904 | chloroplast accumulation movement | IEP | Neighborhood |
| BP | GO:0009965 | leaf morphogenesis | IEP | Neighborhood |
| BP | GO:0009966 | regulation of signal transduction | IEP | Neighborhood |
| CC | GO:0009986 | cell surface | IEP | Neighborhood |
| BP | GO:0010017 | red or far-red light signaling pathway | IEP | Neighborhood |
| BP | GO:0010022 | meristem determinacy | IEP | Neighborhood |
| BP | GO:0010076 | maintenance of floral meristem identity | IEP | Neighborhood |
| BP | GO:0010114 | response to red light | IEP | Neighborhood |
| BP | GO:0010155 | regulation of proton transport | IEP | Neighborhood |
| BP | GO:0010161 | red light signaling pathway | IEP | Neighborhood |
| MF | GO:0010181 | FMN binding | IEP | Neighborhood |
| BP | GO:0010190 | cytochrome b6f complex assembly | IEP | Neighborhood |
| BP | GO:0010191 | mucilage metabolic process | IEP | Neighborhood |
| BP | GO:0010192 | mucilage biosynthetic process | IEP | Neighborhood |
| BP | GO:0010310 | regulation of hydrogen peroxide metabolic process | IEP | Neighborhood |
| BP | GO:0010322 | regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | Neighborhood |
| BP | GO:0010360 | negative regulation of anion channel activity | IEP | Neighborhood |
| BP | GO:0010361 | regulation of anion channel activity by blue light | IEP | Neighborhood |
| BP | GO:0010362 | negative regulation of anion channel activity by blue light | IEP | Neighborhood |
| BP | GO:0010363 | regulation of plant-type hypersensitive response | IEP | Neighborhood |
| BP | GO:0010380 | regulation of chlorophyll biosynthetic process | IEP | Neighborhood |
| BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0010582 | floral meristem determinacy | IEP | Neighborhood |
| BP | GO:0010600 | regulation of auxin biosynthetic process | IEP | Neighborhood |
| BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0010628 | positive regulation of gene expression | IEP | Neighborhood |
| BP | GO:0010646 | regulation of cell communication | IEP | Neighborhood |
| BP | GO:0010675 | regulation of cellular carbohydrate metabolic process | IEP | Neighborhood |
| BP | GO:0010928 | regulation of auxin mediated signaling pathway | IEP | Neighborhood |
| BP | GO:0010941 | regulation of cell death | IEP | Neighborhood |
| MF | GO:0015020 | glucuronosyltransferase activity | IEP | Neighborhood |
| BP | GO:0015031 | protein transport | IEP | Neighborhood |
| MF | GO:0015144 | carbohydrate transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0015925 | galactosidase activity | IEP | Neighborhood |
| BP | GO:0015994 | chlorophyll metabolic process | IEP | Neighborhood |
| BP | GO:0016054 | organic acid catabolic process | IEP | Neighborhood |
| BP | GO:0016310 | phosphorylation | IEP | Neighborhood |
| MF | GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | IEP | Neighborhood |
| BP | GO:0017004 | cytochrome complex assembly | IEP | Neighborhood |
| BP | GO:0019220 | regulation of phosphate metabolic process | IEP | Neighborhood |
| BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
| BP | GO:0019725 | cellular homeostasis | IEP | Neighborhood |
| BP | GO:0019747 | regulation of isoprenoid metabolic process | IEP | Neighborhood |
| BP | GO:0019750 | chloroplast localization | IEP | Neighborhood |
| BP | GO:0023014 | signal transduction by protein phosphorylation | IEP | Neighborhood |
| BP | GO:0023051 | regulation of signaling | IEP | Neighborhood |
| BP | GO:0030003 | cellular cation homeostasis | IEP | Neighborhood |
| BP | GO:0030154 | cell differentiation | IEP | Neighborhood |
| MF | GO:0030371 | translation repressor activity | IEP | Neighborhood |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0031347 | regulation of defense response | IEP | Neighborhood |
| BP | GO:0031348 | negative regulation of defense response | IEP | Neighborhood |
| CC | GO:0031350 | intrinsic component of plastid membrane | IEP | Neighborhood |
| CC | GO:0031351 | integral component of plastid membrane | IEP | Neighborhood |
| CC | GO:0031352 | intrinsic component of plastid inner membrane | IEP | Neighborhood |
| CC | GO:0031353 | integral component of plastid inner membrane | IEP | Neighborhood |
| CC | GO:0031356 | intrinsic component of chloroplast inner membrane | IEP | Neighborhood |
| CC | GO:0031357 | integral component of chloroplast inner membrane | IEP | Neighborhood |
| BP | GO:0031399 | regulation of protein modification process | IEP | Neighborhood |
| CC | GO:0031897 | Tic complex | IEP | Neighborhood |
| BP | GO:0032268 | regulation of cellular protein metabolic process | IEP | Neighborhood |
| BP | GO:0032350 | regulation of hormone metabolic process | IEP | Neighborhood |
| BP | GO:0032410 | negative regulation of transporter activity | IEP | Neighborhood |
| BP | GO:0032413 | negative regulation of ion transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0032879 | regulation of localization | IEP | Neighborhood |
| BP | GO:0033036 | macromolecule localization | IEP | Neighborhood |
| CC | GO:0034357 | photosynthetic membrane | IEP | Neighborhood |
| BP | GO:0034613 | cellular protein localization | IEP | Neighborhood |
| BP | GO:0034754 | cellular hormone metabolic process | IEP | Neighborhood |
| BP | GO:0034762 | regulation of transmembrane transport | IEP | Neighborhood |
| BP | GO:0034763 | negative regulation of transmembrane transport | IEP | Neighborhood |
| BP | GO:0034765 | regulation of ion transmembrane transport | IEP | Neighborhood |
| BP | GO:0034766 | negative regulation of ion transmembrane transport | IEP | Neighborhood |
| BP | GO:0035303 | regulation of dephosphorylation | IEP | Neighborhood |
| BP | GO:0035304 | regulation of protein dephosphorylation | IEP | Neighborhood |
| BP | GO:0035556 | intracellular signal transduction | IEP | Neighborhood |
| BP | GO:0036211 | protein modification process | IEP | Neighborhood |
| BP | GO:0042402 | cellular biogenic amine catabolic process | IEP | Neighborhood |
| BP | GO:0042430 | indole-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0042435 | indole-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0042436 | indole-containing compound catabolic process | IEP | Neighborhood |
| BP | GO:0042592 | homeostatic process | IEP | Neighborhood |
| CC | GO:0042651 | thylakoid membrane | IEP | Neighborhood |
| BP | GO:0042737 | drug catabolic process | IEP | Neighborhood |
| BP | GO:0043067 | regulation of programmed cell death | IEP | Neighborhood |
| BP | GO:0043207 | response to external biotic stimulus | IEP | Neighborhood |
| BP | GO:0043269 | regulation of ion transport | IEP | Neighborhood |
| BP | GO:0043271 | negative regulation of ion transport | IEP | Neighborhood |
| BP | GO:0043412 | macromolecule modification | IEP | Neighborhood |
| BP | GO:0044106 | cellular amine metabolic process | IEP | Neighborhood |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
| CC | GO:0044434 | chloroplast part | IEP | Neighborhood |
| CC | GO:0044435 | plastid part | IEP | Neighborhood |
| CC | GO:0044436 | thylakoid part | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| BP | GO:0045037 | protein import into chloroplast stroma | IEP | Neighborhood |
| BP | GO:0045088 | regulation of innate immune response | IEP | Neighborhood |
| MF | GO:0045182 | translation regulator activity | IEP | Neighborhood |
| BP | GO:0045184 | establishment of protein localization | IEP | Neighborhood |
| MF | GO:0045551 | cinnamyl-alcohol dehydrogenase activity | IEP | Neighborhood |
| BP | GO:0045893 | positive regulation of transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0046218 | indolalkylamine catabolic process | IEP | Neighborhood |
| BP | GO:0046395 | carboxylic acid catabolic process | IEP | Neighborhood |
| BP | GO:0046474 | glycerophospholipid biosynthetic process | IEP | Neighborhood |
| BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | Neighborhood |
| BP | GO:0046777 | protein autophosphorylation | IEP | Neighborhood |
| BP | GO:0046885 | regulation of hormone biosynthetic process | IEP | Neighborhood |
| BP | GO:0046890 | regulation of lipid biosynthetic process | IEP | Neighborhood |
| BP | GO:0046907 | intracellular transport | IEP | Neighborhood |
| BP | GO:0048354 | mucilage biosynthetic process involved in seed coat development | IEP | Neighborhood |
| BP | GO:0048359 | mucilage metabolic process involved in seed coat development | IEP | Neighborhood |
| BP | GO:0048511 | rhythmic process | IEP | Neighborhood |
| BP | GO:0048518 | positive regulation of biological process | IEP | Neighborhood |
| BP | GO:0048519 | negative regulation of biological process | IEP | Neighborhood |
| BP | GO:0048522 | positive regulation of cellular process | IEP | Neighborhood |
| BP | GO:0048583 | regulation of response to stimulus | IEP | Neighborhood |
| BP | GO:0048584 | positive regulation of response to stimulus | IEP | Neighborhood |
| BP | GO:0048585 | negative regulation of response to stimulus | IEP | Neighborhood |
| BP | GO:0048878 | chemical homeostasis | IEP | Neighborhood |
| BP | GO:0050776 | regulation of immune response | IEP | Neighborhood |
| BP | GO:0050789 | regulation of biological process | IEP | Neighborhood |
| BP | GO:0050794 | regulation of cellular process | IEP | Neighborhood |
| BP | GO:0050801 | ion homeostasis | IEP | Neighborhood |
| BP | GO:0050896 | response to stimulus | IEP | Neighborhood |
| BP | GO:0051049 | regulation of transport | IEP | Neighborhood |
| BP | GO:0051051 | negative regulation of transport | IEP | Neighborhood |
| BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051174 | regulation of phosphorus metabolic process | IEP | Neighborhood |
| BP | GO:0051187 | cofactor catabolic process | IEP | Neighborhood |
| BP | GO:0051193 | regulation of cofactor metabolic process | IEP | Neighborhood |
| BP | GO:0051246 | regulation of protein metabolic process | IEP | Neighborhood |
| BP | GO:0051254 | positive regulation of RNA metabolic process | IEP | Neighborhood |
| BP | GO:0051341 | regulation of oxidoreductase activity | IEP | Neighborhood |
| BP | GO:0051353 | positive regulation of oxidoreductase activity | IEP | Neighborhood |
| BP | GO:0051640 | organelle localization | IEP | Neighborhood |
| BP | GO:0051641 | cellular localization | IEP | Neighborhood |
| BP | GO:0051644 | plastid localization | IEP | Neighborhood |
| BP | GO:0051649 | establishment of localization in cell | IEP | Neighborhood |
| BP | GO:0051656 | establishment of organelle localization | IEP | Neighborhood |
| BP | GO:0051667 | establishment of plastid localization | IEP | Neighborhood |
| BP | GO:0051704 | multi-organism process | IEP | Neighborhood |
| BP | GO:0051707 | response to other organism | IEP | Neighborhood |
| CC | GO:0055035 | plastid thylakoid membrane | IEP | Neighborhood |
| BP | GO:0055080 | cation homeostasis | IEP | Neighborhood |
| BP | GO:0055082 | cellular chemical homeostasis | IEP | Neighborhood |
| BP | GO:0061077 | chaperone-mediated protein folding | IEP | Neighborhood |
| BP | GO:0065007 | biological regulation | IEP | Neighborhood |
| BP | GO:0065009 | regulation of molecular function | IEP | Neighborhood |
| BP | GO:0070417 | cellular response to cold | IEP | Neighborhood |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Neighborhood |
| BP | GO:0070838 | divalent metal ion transport | IEP | Neighborhood |
| BP | GO:0071071 | regulation of phospholipid biosynthetic process | IEP | Neighborhood |
| BP | GO:0071214 | cellular response to abiotic stimulus | IEP | Neighborhood |
| BP | GO:0071478 | cellular response to radiation | IEP | Neighborhood |
| BP | GO:0071482 | cellular response to light stimulus | IEP | Neighborhood |
| BP | GO:0071489 | cellular response to red or far red light | IEP | Neighborhood |
| BP | GO:0071491 | cellular response to red light | IEP | Neighborhood |
| BP | GO:0072511 | divalent inorganic cation transport | IEP | Neighborhood |
| BP | GO:0072657 | protein localization to membrane | IEP | Neighborhood |
| BP | GO:0080036 | regulation of cytokinin-activated signaling pathway | IEP | Neighborhood |
| BP | GO:0080037 | negative regulation of cytokinin-activated signaling pathway | IEP | Neighborhood |
| BP | GO:0080134 | regulation of response to stress | IEP | Neighborhood |
| BP | GO:0080135 | regulation of cellular response to stress | IEP | Neighborhood |
| BP | GO:0090056 | regulation of chlorophyll metabolic process | IEP | Neighborhood |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | Neighborhood |
| BP | GO:0090150 | establishment of protein localization to membrane | IEP | Neighborhood |
| BP | GO:0090354 | regulation of auxin metabolic process | IEP | Neighborhood |
| CC | GO:0098552 | side of membrane | IEP | Neighborhood |
| CC | GO:0098562 | cytoplasmic side of membrane | IEP | Neighborhood |
| BP | GO:0104004 | cellular response to environmental stimulus | IEP | Neighborhood |
| BP | GO:1901401 | regulation of tetrapyrrole metabolic process | IEP | Neighborhood |
| BP | GO:1901463 | regulation of tetrapyrrole biosynthetic process | IEP | Neighborhood |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Neighborhood |
| BP | GO:1901606 | alpha-amino acid catabolic process | IEP | Neighborhood |
| BP | GO:1902395 | regulation of 1-deoxy-D-xylulose-5-phosphate synthase activity | IEP | Neighborhood |
| BP | GO:1902551 | regulation of catalase activity | IEP | Neighborhood |
| BP | GO:1902553 | positive regulation of catalase activity | IEP | Neighborhood |
| BP | GO:1902680 | positive regulation of RNA biosynthetic process | IEP | Neighborhood |
| BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:1903725 | regulation of phospholipid metabolic process | IEP | Neighborhood |
| BP | GO:1903792 | negative regulation of anion transport | IEP | Neighborhood |
| BP | GO:1903960 | negative regulation of anion transmembrane transport | IEP | Neighborhood |
| BP | GO:1904062 | regulation of cation transmembrane transport | IEP | Neighborhood |
| BP | GO:1905392 | plant organ morphogenesis | IEP | Neighborhood |
| BP | GO:2000071 | regulation of defense response by callose deposition | IEP | Neighborhood |
| BP | GO:2000377 | regulation of reactive oxygen species metabolic process | IEP | Neighborhood |
| BP | GO:2000468 | regulation of peroxidase activity | IEP | Neighborhood |
| BP | GO:2000470 | positive regulation of peroxidase activity | IEP | Neighborhood |
| BP | GO:2000762 | regulation of phenylpropanoid metabolic process | IEP | Neighborhood |
