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  5. Zm00001e021962_P003

Zm00001e021962_P003


Description : transcription factor (SBP)


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree ,
OG_06_0000075 (SeedPlants) Phylogenetic Tree(s): OG_06_0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e021962_P003
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00197010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
AMTR_s00106p00142470 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
AT1G02065 SPL8 squamosa promoter binding protein-like 8 0.05 Archaeplastida
AT1G27360 SPL11 squamosa promoter-like 11 0.03 Archaeplastida
AT1G27370 SPL10 squamosa promoter binding protein-like 10 0.05 Archaeplastida
AT1G53160 SPL4 squamosa promoter binding protein-like 4 0.05 Archaeplastida
AT1G69170 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Archaeplastida
AT2G33810 SPL3 squamosa promoter binding protein-like 3 0.05 Archaeplastida
AT3G15270 SPL5 squamosa promoter binding protein-like 5 0.04 Archaeplastida
AT5G43270 SPL2 squamosa promoter binding protein-like 2 0.06 Archaeplastida
Cre07.g345050 No alias RNA biosynthesis.transcriptional activation.SBP... 0.01 Archaeplastida
GSVIVT01018205001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
GSVIVT01033519001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
Gb_26599 No alias transcription factor (SBP) 0.03 Archaeplastida
Gb_38013 No alias transcription factor (SBP) 0.02 Archaeplastida
Gb_38014 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os04g46580.1 No alias transcription factor (SBP) 0.06 Archaeplastida
LOC_Os06g44860.1 No alias transcription factor (SBP) 0.1 Archaeplastida
LOC_Os07g32170.1 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os08g39890.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os08g41940.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os09g31438.1 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os09g32944.1 No alias transcription factor (SBP) 0.04 Archaeplastida
MA_20537g0010 No alias transcription factor (SBP) 0.03 Archaeplastida
Solyc02g077920.4.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Solyc05g015840.3.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Solyc07g062980.4.1 No alias transcription factor (SBP) 0.04 Archaeplastida
Solyc10g009080.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e013761_P001 No alias transcription factor (SBP) 0.06 Archaeplastida
Zm00001e025234_P001 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e034537_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e035060_P002 No alias transcription factor (SBP) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004333 SBP_dom 105 178
No external refs found!