AT3G26932 (DRB3)

Aliases : DRB3

Description : dsRNA-binding protein 3

Gene families : OG0000434 (Archaeplastida) Phylogenetic Tree(s): OG0000434_tree ,
OG_05_0000373 (LandPlants) Phylogenetic Tree(s): OG_05_0000373_tree ,
OG_06_0000829 (SeedPlants) Phylogenetic Tree(s): OG_06_0000829_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G26932
Cluster	HCCA: Cluster_116

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00199170	evm_27.TU.AmTr_v1...	Double-stranded RNA-binding protein 2 OS=Oryza sativa...	0.04	Archaeplastida
AT1G09700	DRB1, HYL1	dsRNA-binding domain-like superfamily protein	0.04	Archaeplastida
AT5G41070	DRB5	dsRNA-binding protein 5	0.01	Archaeplastida
GSVIVT01033035001	No alias	Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana	0.04	Archaeplastida
Gb_18815	No alias	Double-stranded RNA-binding protein 6 OS=Oryza sativa...	0.03	Archaeplastida
LOC_Os09g33460.1	No alias	Double-stranded RNA-binding protein 5 OS=Oryza sativa...	0.09	Archaeplastida
MA_10433535g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_15142g0010	No alias	Double-stranded RNA-binding protein 2 OS=Arabidopsis...	0.03	Archaeplastida
MA_392655g0010	No alias	no hits & (original description: none)	0.01	Archaeplastida
MA_693782g0010	No alias	component HYL1 of DCL1-HYL1 miRNA biogenesis complex	0.03	Archaeplastida
Pp3c17_16900V3.1	No alias	dsRNA-binding protein 2	0.03	Archaeplastida
Pp3c17_17510V3.1	No alias	dsRNA-binding protein 2	0.04	Archaeplastida
Solyc01g009190.3.1	No alias	Double-stranded RNA-binding protein 1 OS=Oryza sativa...	0.04	Archaeplastida
Solyc03g118950.3.1	No alias	Double-stranded RNA-binding protein 4 OS=Oryza sativa...	0.03	Archaeplastida
Zm00001e004552_P001	No alias	Double-stranded RNA-binding protein 6 OS=Oryza sativa...	0.02	Archaeplastida
Zm00001e010132_P001	No alias	Double-stranded RNA-binding protein 5 OS=Oryza sativa...	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0002252	immune effector process	None	Extended
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003725	double-stranded RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010267	production of ta-siRNAs involved in RNA interference	RCA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0030422	production of siRNA involved in RNA interference	None	Extended
BP	GO:0031050	dsRNA fragmentation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035196	production of miRNAs involved in gene silencing by miRNA	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051607	defense response to virus	RCA	Interproscan
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0070918	production of small RNA involved in gene silencing by RNA	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000064	L-ornithine transmembrane transporter activity	IEP	Neighborhood
BP	GO:0000578	embryonic axis specification	IEP	Neighborhood
BP	GO:0001558	regulation of cell growth	IEP	Neighborhood
MF	GO:0001871	pattern binding	IEP	Neighborhood
MF	GO:0001872	(1->3)-beta-D-glucan binding	IEP	Neighborhood
BP	GO:0003002	regionalization	IEP	Neighborhood
BP	GO:0003006	developmental process involved in reproduction	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0004402	histone acetyltransferase activity	IEP	Neighborhood
MF	GO:0004888	transmembrane signaling receptor activity	IEP	Neighborhood
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005290	L-histidine transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006342	chromatin silencing	IEP	Neighborhood
BP	GO:0006346	methylation-dependent chromatin silencing	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006473	protein acetylation	IEP	Neighborhood
BP	GO:0006475	internal protein amino acid acetylation	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
BP	GO:0008356	asymmetric cell division	IEP	Neighborhood
MF	GO:0008810	cellulase activity	IEP	Neighborhood
BP	GO:0009554	megasporogenesis	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0009786	regulation of asymmetric cell division	IEP	Neighborhood
BP	GO:0009798	axis specification	IEP	Neighborhood
BP	GO:0009799	specification of symmetry	IEP	Neighborhood
BP	GO:0009855	determination of bilateral symmetry	IEP	Neighborhood
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	Neighborhood
BP	GO:0009887	animal organ morphogenesis	IEP	Neighborhood
BP	GO:0009888	tissue development	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0009908	flower development	IEP	Neighborhood
BP	GO:0009913	epidermal cell differentiation	IEP	Neighborhood
BP	GO:0009942	longitudinal axis specification	IEP	Neighborhood
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	Neighborhood
BP	GO:0009965	leaf morphogenesis	IEP	Neighborhood
CC	GO:0009986	cell surface	IEP	Neighborhood
BP	GO:0010016	shoot system morphogenesis	IEP	Neighborhood
BP	GO:0010051	xylem and phloem pattern formation	IEP	Neighborhood
BP	GO:0010075	regulation of meristem growth	IEP	Neighborhood
BP	GO:0010093	specification of floral organ identity	IEP	Neighborhood
BP	GO:0010143	cutin biosynthetic process	IEP	Neighborhood
BP	GO:0010148	transpiration	IEP	Neighborhood
BP	GO:0010158	abaxial cell fate specification	IEP	Neighborhood
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	Neighborhood
MF	GO:0010385	double-stranded methylated DNA binding	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
MF	GO:0015173	aromatic amino acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015174	basic amino acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015179	L-amino acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015181	arginine transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015189	L-lysine transmembrane transporter activity	IEP	Neighborhood
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Neighborhood
BP	GO:0016458	gene silencing	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
BP	GO:0016573	histone acetylation	IEP	Neighborhood
MF	GO:0017048	Rho GTPase binding	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
BP	GO:0018193	peptidyl-amino acid modification	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Neighborhood
MF	GO:0019199	transmembrane receptor protein kinase activity	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
CC	GO:0030139	endocytic vesicle	IEP	Neighborhood
BP	GO:0030155	regulation of cell adhesion	IEP	Neighborhood
MF	GO:0030247	polysaccharide binding	IEP	Neighborhood
BP	GO:0030855	epithelial cell differentiation	IEP	Neighborhood
BP	GO:0031047	gene silencing by RNA	IEP	Neighborhood
BP	GO:0031048	chromatin silencing by small RNA	IEP	Neighborhood
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	Neighborhood
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
MF	GO:0038023	signaling receptor activity	IEP	Neighborhood
BP	GO:0040008	regulation of growth	IEP	Neighborhood
BP	GO:0040029	regulation of gene expression, epigenetic	IEP	Neighborhood
MF	GO:0042802	identical protein binding	IEP	Neighborhood
BP	GO:0043543	protein acylation	IEP	Neighborhood
BP	GO:0043966	histone H3 acetylation	IEP	Neighborhood
BP	GO:0043971	histone H3-K18 acetylation	IEP	Neighborhood
BP	GO:0043972	histone H3-K23 acetylation	IEP	Neighborhood
BP	GO:0044030	regulation of DNA methylation	IEP	Neighborhood
BP	GO:0044154	histone H3-K14 acetylation	IEP	Neighborhood
BP	GO:0045596	negative regulation of cell differentiation	IEP	Neighborhood
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	Neighborhood
BP	GO:0045892	negative regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0048281	inflorescence morphogenesis	IEP	Neighborhood
BP	GO:0048366	leaf development	IEP	Neighborhood
BP	GO:0048367	shoot system development	IEP	Neighborhood
BP	GO:0048437	floral organ development	IEP	Neighborhood
BP	GO:0048439	flower morphogenesis	IEP	Neighborhood
BP	GO:0048440	carpel development	IEP	Neighborhood
BP	GO:0048451	petal formation	IEP	Neighborhood
BP	GO:0048453	sepal formation	IEP	Neighborhood
BP	GO:0048481	plant ovule development	IEP	Neighborhood
BP	GO:0048497	maintenance of floral organ identity	IEP	Neighborhood
BP	GO:0048507	meristem development	IEP	Neighborhood
BP	GO:0048509	regulation of meristem development	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
BP	GO:0048580	regulation of post-embryonic development	IEP	Neighborhood
BP	GO:0048608	reproductive structure development	IEP	Neighborhood
BP	GO:0048638	regulation of developmental growth	IEP	Neighborhood
BP	GO:0048653	anther development	IEP	Neighborhood
BP	GO:0048731	system development	IEP	Neighborhood
BP	GO:0048825	cotyledon development	IEP	Neighborhood
BP	GO:0048827	phyllome development	IEP	Neighborhood
BP	GO:0048829	root cap development	IEP	Neighborhood
BP	GO:0048831	regulation of shoot system development	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0048869	cellular developmental process	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050793	regulation of developmental process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051239	regulation of multicellular organismal process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0051301	cell division	IEP	Neighborhood
BP	GO:0051302	regulation of cell division	IEP	Neighborhood
BP	GO:0051567	histone H3-K9 methylation	IEP	Neighborhood
MF	GO:0060089	molecular transducer activity	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0061647	histone H3-K9 modification	IEP	Neighborhood
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0065001	specification of axis polarity	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
BP	GO:0080188	RNA-directed DNA methylation	IEP	Neighborhood
BP	GO:0090567	reproductive shoot system development	IEP	Neighborhood
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	Neighborhood
BP	GO:0090700	maintenance of plant organ identity	IEP	Neighborhood
BP	GO:0090701	specification of plant organ identity	IEP	Neighborhood
BP	GO:0099402	plant organ development	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
MF	GO:1901474	azole transmembrane transporter activity	IEP	Neighborhood
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:1905393	plant organ formation	IEP	Neighborhood
BP	GO:2000026	regulation of multicellular organismal development	IEP	Neighborhood
BP	GO:2000027	regulation of animal organ morphogenesis	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR014720	dsRBD_dom	88	150
IPR014720	dsRBD_dom	2	68

External Links

No external refs found!

AT3G26932 (DRB3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation