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  5. Zm00001e024922_P001

Zm00001e024922_P001


Description : poly(A) RNA polymerase


Gene families : OG0001358 (Archaeplastida) Phylogenetic Tree(s): OG0001358_tree ,
OG_05_0001486 (LandPlants) Phylogenetic Tree(s): OG_05_0001486_tree ,
OG_06_0001201 (SeedPlants) Phylogenetic Tree(s): OG_06_0001201_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e024922_P001
Cluster HCCA: Cluster_310

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01008352001 No alias RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.08 Archaeplastida
GSVIVT01016969001 No alias RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.03 Archaeplastida
LOC_Os02g13400.2 No alias poly(A) RNA polymerase 0.04 Archaeplastida
LOC_Os06g21470.1 No alias poly(A) RNA polymerase 0.03 Archaeplastida
Mp7g10140.1 No alias poly(A) RNA polymerase 0.03 Archaeplastida
Smo169728 No alias RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.02 Archaeplastida
Solyc08g066200.3.1 No alias poly(A) RNA polymerase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004652 polynucleotide adenylyltransferase activity IEA Interproscan
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
BP GO:0043631 RNA polyadenylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044599 AP-5 adaptor complex IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR007012 PolA_pol_cen_dom 21 365
IPR002934 Polymerase_NTP_transf_dom 94 166
IPR007010 PolA_pol_RNA-bd_dom 427 499
IPR007010 PolA_pol_RNA-bd_dom 368 425
No external refs found!