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  5. Zm00001e026664_P002

Zm00001e026664_P002


Description : RNA editing factor (BLX)


Gene families : OG0002360 (Archaeplastida) Phylogenetic Tree(s): OG0002360_tree ,
OG_05_0000472 (LandPlants) Phylogenetic Tree(s): OG_05_0000472_tree ,
OG_06_0000277 (SeedPlants) Phylogenetic Tree(s): OG_06_0000277_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e026664_P002
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
AT2G15690 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G16835 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Gb_02613 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_05982 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_10270 No alias RNA editing factor (MEF8). RNA editing factor (BLX) 0.03 Archaeplastida
Gb_28765 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Gb_31111 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Gb_35793 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_12023g0010 No alias RNA editing factor (MEF9) 0.04 Archaeplastida
MA_121102g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_136498g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_189553g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_376862g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_42343g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_858608g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_904305g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Smo92492 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Solyc07g021620.1.1 No alias RNA editing factor (BLX) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP Neighborhood
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Neighborhood
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
CC GO:1902495 transmembrane transporter complex IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
CC GO:1990351 transporter complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 311 337
IPR002885 Pentatricopeptide_repeat 220 236
IPR002885 Pentatricopeptide_repeat 345 371
IPR032867 DYW_dom 485 570
No external refs found!