- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : subunit beta of TFIIf basal transcription factor complex
Gene families : OG0002658 (Archaeplastida) Phylogenetic Tree(s): OG0002658_tree ,
OG_05_0003379 (LandPlants) Phylogenetic Tree(s): OG_05_0003379_tree ,
OG_06_0004203 (SeedPlants) Phylogenetic Tree(s): OG_06_0004203_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e027383_P001 | |
| Cluster | HCCA: Cluster_15 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000219.44 | No alias | RNA biosynthesis.RNA polymerase II-dependent... | 0.01 | Archaeplastida | |
| LOC_Os05g43450.1 | No alias | subunit beta of TFIIf basal transcription factor complex | 0.04 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| CC | GO:0000808 | origin recognition complex | IEP | Neighborhood |
| MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Neighborhood |
| MF | GO:0004743 | pyruvate kinase activity | IEP | Neighborhood |
| MF | GO:0004843 | thiol-dependent ubiquitin-specific protease activity | IEP | Neighborhood |
| MF | GO:0005092 | GDP-dissociation inhibitor activity | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
| CC | GO:0005694 | chromosome | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
| BP | GO:0006260 | DNA replication | IEP | Neighborhood |
| BP | GO:0006270 | DNA replication initiation | IEP | Neighborhood |
| BP | GO:0006282 | regulation of DNA repair | IEP | Neighborhood |
| BP | GO:0006575 | cellular modified amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0006658 | phosphatidylserine metabolic process | IEP | Neighborhood |
| BP | GO:0006659 | phosphatidylserine biosynthetic process | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Neighborhood |
| BP | GO:0007264 | small GTPase mediated signal transduction | IEP | Neighborhood |
| BP | GO:0008064 | regulation of actin polymerization or depolymerization | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| CC | GO:0008290 | F-actin capping protein complex | IEP | Neighborhood |
| BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0010639 | negative regulation of organelle organization | IEP | Neighborhood |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Neighborhood |
| MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| BP | GO:0030832 | regulation of actin filament length | IEP | Neighborhood |
| BP | GO:0030833 | regulation of actin filament polymerization | IEP | Neighborhood |
| BP | GO:0030834 | regulation of actin filament depolymerization | IEP | Neighborhood |
| BP | GO:0030835 | negative regulation of actin filament depolymerization | IEP | Neighborhood |
| BP | GO:0030837 | negative regulation of actin filament polymerization | IEP | Neighborhood |
| MF | GO:0030955 | potassium ion binding | IEP | Neighborhood |
| BP | GO:0031333 | negative regulation of protein complex assembly | IEP | Neighborhood |
| MF | GO:0031420 | alkali metal ion binding | IEP | Neighborhood |
| BP | GO:0032271 | regulation of protein polymerization | IEP | Neighborhood |
| BP | GO:0032272 | negative regulation of protein polymerization | IEP | Neighborhood |
| BP | GO:0032535 | regulation of cellular component size | IEP | Neighborhood |
| MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
| BP | GO:0032956 | regulation of actin cytoskeleton organization | IEP | Neighborhood |
| BP | GO:0032970 | regulation of actin filament-based process | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| BP | GO:0033043 | regulation of organelle organization | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
| BP | GO:0042398 | cellular modified amino acid biosynthetic process | IEP | Neighborhood |
| CC | GO:0042575 | DNA polymerase complex | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043242 | negative regulation of protein complex disassembly | IEP | Neighborhood |
| BP | GO:0043244 | regulation of protein complex disassembly | IEP | Neighborhood |
| BP | GO:0043254 | regulation of protein complex assembly | IEP | Neighborhood |
| CC | GO:0043625 | delta DNA polymerase complex | IEP | Neighborhood |
| BP | GO:0044087 | regulation of cellular component biogenesis | IEP | Neighborhood |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
| CC | GO:0044422 | organelle part | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044427 | chromosomal part | IEP | Neighborhood |
| CC | GO:0044428 | nuclear part | IEP | Neighborhood |
| CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
| CC | GO:0044454 | nuclear chromosome part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0048583 | regulation of response to stimulus | IEP | Neighborhood |
| BP | GO:0051016 | barbed-end actin filament capping | IEP | Neighborhood |
| BP | GO:0051052 | regulation of DNA metabolic process | IEP | Neighborhood |
| BP | GO:0051128 | regulation of cellular component organization | IEP | Neighborhood |
| BP | GO:0051129 | negative regulation of cellular component organization | IEP | Neighborhood |
| BP | GO:0051169 | nuclear transport | IEP | Neighborhood |
| BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
| BP | GO:0051493 | regulation of cytoskeleton organization | IEP | Neighborhood |
| BP | GO:0051494 | negative regulation of cytoskeleton organization | IEP | Neighborhood |
| BP | GO:0051693 | actin filament capping | IEP | Neighborhood |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Neighborhood |
| BP | GO:0080134 | regulation of response to stress | IEP | Neighborhood |
| BP | GO:0080135 | regulation of cellular response to stress | IEP | Neighborhood |
| BP | GO:0090066 | regulation of anatomical structure size | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
| BP | GO:0110053 | regulation of actin filament organization | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
| BP | GO:1901879 | regulation of protein depolymerization | IEP | Neighborhood |
| BP | GO:1901880 | negative regulation of protein depolymerization | IEP | Neighborhood |
| CC | GO:1902494 | catalytic complex | IEP | Neighborhood |
| BP | GO:1902903 | regulation of supramolecular fiber organization | IEP | Neighborhood |
| BP | GO:1902904 | negative regulation of supramolecular fiber organization | IEP | Neighborhood |
| CC | GO:1990234 | transferase complex | IEP | Neighborhood |
| BP | GO:2001020 | regulation of response to DNA damage stimulus | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |