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  5. Zm00001e028030_P001

Zm00001e028030_P001


Description : Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana (sp|q9fnl2|pp418_arath : 327.0)


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0005495 (SeedPlants) Phylogenetic Tree(s): OG_06_0005495_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e028030_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00015p00258950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.03 Archaeplastida
AT1G07740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G46100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
GSVIVT01008016001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01031218001 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.08 Archaeplastida
GSVIVT01034953001 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.05 Archaeplastida
Gb_38399 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.04 Archaeplastida
MA_131324g0010 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.04 Archaeplastida
Mp1g21650.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 194 224
IPR002885 Pentatricopeptide_repeat 300 329
IPR002885 Pentatricopeptide_repeat 131 176
IPR002885 Pentatricopeptide_repeat 230 279
IPR002885 Pentatricopeptide_repeat 343 368
No external refs found!