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  5. Zm00001e028261_P001

Zm00001e028261_P001


Description : Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana (sp|q9stk5|pp269_arath : 442.0)


Gene families : OG0008558 (Archaeplastida) Phylogenetic Tree(s): OG0008558_tree ,
OG_05_0007784 (LandPlants) Phylogenetic Tree(s): OG_05_0007784_tree ,
OG_06_0005602 (SeedPlants) Phylogenetic Tree(s): OG_06_0005602_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e028261_P001
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00223850 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g48250,... 0.03 Archaeplastida
AT3G02490 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT3G48250 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
GSVIVT01036493001 No alias Pentatricopeptide repeat-containing protein At3g02490,... 0.05 Archaeplastida
LOC_Os01g73950.1 No alias Pentatricopeptide repeat-containing protein At3g48250,... 0.04 Archaeplastida
MA_41368g0010 No alias Pentatricopeptide repeat-containing protein At3g48250,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 348 371
IPR002885 Pentatricopeptide_repeat 383 407
IPR002885 Pentatricopeptide_repeat 302 333
IPR002885 Pentatricopeptide_repeat 267 299
No external refs found!