AT3G44750 (HDA3, ATHD2A, HDT1, HD2A)


Aliases : HDA3, ATHD2A, HDT1, HD2A

Description : histone deacetylase 3


Gene families : OG0001808 (Archaeplastida) Phylogenetic Tree(s): OG0001808_tree ,
OG_05_0001598 (LandPlants) Phylogenetic Tree(s): OG_05_0001598_tree ,
OG_06_0001227 (SeedPlants) Phylogenetic Tree(s): OG_06_0001227_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G44750
Cluster HCCA: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000388.65 No alias Protein modification.protein folding and quality... 0.04 Archaeplastida
Cpa|evm.model.tig00000983.33 No alias Chromatin organisation.histone modifications.histone... 0.03 Archaeplastida
GSVIVT01031404001 No alias Chromatin organisation.histone modifications.histone... 0.07 Archaeplastida
LOC_Os05g51830.1 No alias histone deacetylase (HDT/HD2) 0.08 Archaeplastida
MA_3905g0020 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_601245g0010 No alias histone deacetylase (HDT/HD2) 0.07 Archaeplastida
Mp5g10240.1 No alias histone deacetylase (HDT/HD2) 0.04 Archaeplastida
Pp3c2_11820V3.1 No alias histone deacetylase 3 0.09 Archaeplastida
Pp3c2_6080V3.1 No alias histone deacetylase 3 0.1 Archaeplastida
Smo428242 No alias Chromatin organisation.histone modifications.histone... 0.03 Archaeplastida
Solyc09g009030.4.1 No alias histone deacetylase (HDT/HD2) 0.16 Archaeplastida
Solyc11g066840.3.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e018891_P001 No alias histone deacetylase (HDT/HD2) 0.03 Archaeplastida
Zm00001e027707_P004 No alias histone deacetylase (HDT/HD2) 0.05 Archaeplastida
Zm00001e028512_P001 No alias histone deacetylase (HDT/HD2) 0.04 Archaeplastida
Zm00001e032246_P002 No alias histone deacetylase (HDT/HD2) 0.07 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing RCA Interproscan
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003676 nucleic acid binding ISS Interproscan
MF GO:0004407 histone deacetylase activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005730 nucleolus TAS Interproscan
BP GO:0006164 purine nucleotide biosynthetic process RCA Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process RCA Interproscan
BP GO:0009294 DNA mediated transformation IMP Interproscan
BP GO:0009944 polarity specification of adaxial/abaxial axis IMP Interproscan
BP GO:0010162 seed dormancy process IEP Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0000175 3'-5'-exoribonuclease activity IEP Neighborhood
BP GO:0000741 karyogamy IEP Neighborhood
BP GO:0000957 mitochondrial RNA catabolic process IEP Neighborhood
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
BP GO:0000963 mitochondrial RNA processing IEP Neighborhood
MF GO:0000976 transcription regulatory region sequence-specific DNA binding IEP Neighborhood
MF GO:0000987 proximal promoter sequence-specific DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Neighborhood
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004532 exoribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004654 polyribonucleotide nucleotidyltransferase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005666 RNA polymerase III complex IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005773 vacuole IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006094 gluconeogenesis IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006626 protein targeting to mitochondrion IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006954 inflammatory response IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008235 metalloexopeptidase activity IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009304 tRNA transcription IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
BP GO:0009639 response to red or far red light IEP Neighborhood
BP GO:0009640 photomorphogenesis IEP Neighborhood
BP GO:0009735 response to cytokinin IEP Neighborhood
BP GO:0009756 carbohydrate mediated signaling IEP Neighborhood
BP GO:0009790 embryo development IEP Neighborhood
BP GO:0009791 post-embryonic development IEP Neighborhood
BP GO:0009793 embryo development ending in seed dormancy IEP Neighborhood
BP GO:0009845 seed germination IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009933 meristem structural organization IEP Neighborhood
BP GO:0009955 adaxial/abaxial pattern specification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0010022 meristem determinacy IEP Neighborhood
BP GO:0010025 wax biosynthetic process IEP Neighborhood
BP GO:0010030 positive regulation of seed germination IEP Neighborhood
BP GO:0010074 maintenance of meristem identity IEP Neighborhood
BP GO:0010077 maintenance of inflorescence meristem identity IEP Neighborhood
BP GO:0010166 wax metabolic process IEP Neighborhood
BP GO:0010182 sugar mediated signaling pathway IEP Neighborhood
BP GO:0010219 regulation of vernalization response IEP Neighborhood
BP GO:0010220 positive regulation of vernalization response IEP Neighborhood
BP GO:0010467 gene expression IEP Neighborhood
BP GO:0010582 floral meristem determinacy IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0017126 nucleologenesis IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018195 peptidyl-arginine modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018216 peptidyl-arginine methylation IEP Neighborhood
BP GO:0019319 hexose biosynthetic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019827 stem cell population maintenance IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0019915 lipid storage IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
CC GO:0022626 cytosolic ribosome IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
MF GO:0030515 snoRNA binding IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0034969 histone arginine methylation IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0042991 obsolete transcription factor import into nucleus IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043985 histone H4-R3 methylation IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0048532 anatomical structure arrangement IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048825 cotyledon development IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0050826 response to freezing IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Neighborhood
BP GO:0098727 maintenance of cell number IEP Neighborhood
BP GO:0098781 ncRNA transcription IEP Neighborhood
BP GO:0140053 mitochondrial gene expression IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901568 fatty acid derivative metabolic process IEP Neighborhood
BP GO:1901570 fatty acid derivative biosynthetic process IEP Neighborhood
BP GO:1905392 plant organ morphogenesis IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000241 regulation of reproductive process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!