Zm00001e030358_P003

Description : component FtsH1|2|5|6|8 of FtsH plastidial protease complexes

Gene families : OG0000346 (Archaeplastida) Phylogenetic Tree(s): OG0000346_tree ,
OG_05_0002814 (LandPlants) Phylogenetic Tree(s): OG_05_0002814_tree ,
OG_06_0003173 (SeedPlants) Phylogenetic Tree(s): OG_06_0003173_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e030358_P003
Cluster	HCCA: Cluster_319

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00232760	evm_27.TU.AmTr_v1...	Protein degradation.peptidase families.metallopeptidase...	0.02	Archaeplastida
AMTR_s00106p00108310	evm_27.TU.AmTr_v1...	Protein degradation.peptidase families.metallopeptidase...	0.06	Archaeplastida
AT1G06430	FTSH8	FTSH protease 8	0.04	Archaeplastida
AT1G50250	FTSH1	FTSH protease 1	0.06	Archaeplastida
AT5G42270	FTSH5, VAR1	FtsH extracellular protease family	0.07	Archaeplastida
Cpa\|evm.model.tig00000704.23	No alias	ATP-dependent zinc metalloprotease FTSH 1, chloroplastic...	0.02	Archaeplastida
Cpa\|evm.model.tig00021127.121	No alias	ATP-dependent zinc metalloprotease FTSH 5, chloroplastic...	0.02	Archaeplastida
Cre09.g393950	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.05	Archaeplastida
Cre12.g485800	No alias	Protein degradation.peptidase families.metallopeptidase...	0.08	Archaeplastida
Cre17.g720050	No alias	Protein degradation.peptidase families.metallopeptidase...	0.1	Archaeplastida
GSVIVT01008686001	No alias	ATP-dependent zinc metalloprotease FTSH 1, chloroplastic...	0.11	Archaeplastida
GSVIVT01020760001	No alias	Protein degradation.peptidase families.metallopeptidase...	0.11	Archaeplastida
Gb_06887	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.06	Archaeplastida
Gb_12830	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.09	Archaeplastida
LOC_Os06g45820.1	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.17	Archaeplastida
LOC_Os06g51029.1	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.14	Archaeplastida
MA_188257g0010	No alias	no hits & (original description: none)	0.08	Archaeplastida
MA_98203g0010	No alias	No annotation	0.1	Archaeplastida
Mp4g19200.1	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.02	Archaeplastida
Pp3c12_22830V3.1	No alias	FtsH extracellular protease family	0.08	Archaeplastida
Pp3c20_15780V3.1	No alias	FtsH extracellular protease family	0.07	Archaeplastida
Pp3c22_8480V3.1	No alias	FtsH extracellular protease family	0.02	Archaeplastida
Pp3c23_14665V3.1	No alias	FtsH extracellular protease family	0.05	Archaeplastida
Pp3c23_8400V3.1	No alias	FtsH extracellular protease family	0.07	Archaeplastida
Pp3c4_20860V3.1	No alias	cell division protein ftsH, putative	0.02	Archaeplastida
Smo139726	No alias	Protein degradation.peptidase families.metallopeptidase...	0.02	Archaeplastida
Smo149856	No alias	Protein degradation.peptidase families.metallopeptidase...	0.04	Archaeplastida
Smo152929	No alias	Protein degradation.peptidase families.metallopeptidase...	0.04	Archaeplastida
Solyc03g046340.3.1	No alias	component FtsHi of protein translocation ATPase motor complex	0.03	Archaeplastida
Solyc04g082250.3.1	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.04	Archaeplastida
Solyc07g055320.4.1	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.04	Archaeplastida
Solyc08g082530.4.1	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004222	metalloendopeptidase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003725	double-stranded RNA binding	IEP	Neighborhood
MF	GO:0004325	ferrochelatase activity	IEP	Neighborhood
MF	GO:0004602	glutathione peroxidase activity	IEP	Neighborhood
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Neighborhood
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0006721	terpenoid metabolic process	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006766	vitamin metabolic process	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006772	thiamine metabolic process	IEP	Neighborhood
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0006783	heme biosynthetic process	IEP	Neighborhood
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Neighborhood
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
BP	GO:0009110	vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0009116	nucleoside metabolic process	IEP	Neighborhood
BP	GO:0009119	ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0009228	thiamine biosynthetic process	IEP	Neighborhood
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
BP	GO:0016114	terpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016311	dephosphorylation	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Neighborhood
BP	GO:0017004	cytochrome complex assembly	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Neighborhood
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Neighborhood
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0042168	heme metabolic process	IEP	Neighborhood
BP	GO:0042278	purine nucleoside metabolic process	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042440	pigment metabolic process	IEP	Neighborhood
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Neighborhood
BP	GO:0044281	small molecule metabolic process	IEP	Neighborhood
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0046148	pigment biosynthetic process	IEP	Neighborhood
MF	GO:0046429	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0052592	oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1901657	glycosyl compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	250	381
IPR000642	Peptidase_M41	464	653

External Links

No external refs found!

Zm00001e030358_P003

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation