- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : non-catalytic component Dpb4 of DNA polymerase epsilon complex
Gene families : OG0000142 (Archaeplastida) Phylogenetic Tree(s): OG0000142_tree ,
OG_05_0006185 (LandPlants) Phylogenetic Tree(s): OG_05_0006185_tree ,
OG_06_0006531 (SeedPlants) Phylogenetic Tree(s): OG_06_0006531_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e033623_P001 | |
| Cluster | HCCA: Cluster_313 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00042p00120080 | evm_27.TU.AmTr_v1... | RNA biosynthesis.RNA polymerase II-dependent... | 0.03 | Archaeplastida | |
| LOC_Os05g38820.4 | No alias | component NF-YB of NF-Y transcription factor complex | 0.02 | Archaeplastida | |
| MA_605637g0010 | No alias | component NF-YB of NF-Y transcription factor complex | 0.03 | Archaeplastida | |
| Mp6g07410.1 | No alias | component beta of TATA box-binding protein NC2 regulator complex | 0.02 | Archaeplastida | |
| Pp3c3_14260V3.1 | No alias | nuclear factor Y, subunit B3 | 0.04 | Archaeplastida | |
| Smo227538 | No alias | RNA biosynthesis.RNA polymerase II-dependent... | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0002097 | tRNA wobble base modification | IEP | Neighborhood |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | Neighborhood |
| MF | GO:0003682 | chromatin binding | IEP | Neighborhood |
| MF | GO:0003712 | transcription coregulator activity | IEP | Neighborhood |
| MF | GO:0003905 | alkylbase DNA N-glycosylase activity | IEP | Neighborhood |
| MF | GO:0004518 | nuclease activity | IEP | Neighborhood |
| MF | GO:0004540 | ribonuclease activity | IEP | Neighborhood |
| CC | GO:0005667 | transcription factor complex | IEP | Neighborhood |
| BP | GO:0006066 | alcohol metabolic process | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006284 | base-excision repair | IEP | Neighborhood |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006399 | tRNA metabolic process | IEP | Neighborhood |
| BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0007034 | vacuolar transport | IEP | Neighborhood |
| BP | GO:0007062 | sister chromatid cohesion | IEP | Neighborhood |
| BP | GO:0007064 | mitotic sister chromatid cohesion | IEP | Neighborhood |
| BP | GO:0008033 | tRNA processing | IEP | Neighborhood |
| MF | GO:0008725 | DNA-3-methyladenine glycosylase activity | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016311 | dephosphorylation | IEP | Neighborhood |
| CC | GO:0016592 | mediator complex | IEP | Neighborhood |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Neighborhood |
| MF | GO:0019104 | DNA N-glycosylase activity | IEP | Neighborhood |
| BP | GO:0019751 | polyol metabolic process | IEP | Neighborhood |
| BP | GO:0022402 | cell cycle process | IEP | Neighborhood |
| CC | GO:0031390 | Ctf18 RFC-like complex | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| CC | GO:0033588 | Elongator holoenzyme complex | IEP | Neighborhood |
| BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
| MF | GO:0042393 | histone binding | IEP | Neighborhood |
| BP | GO:0043647 | inositol phosphate metabolic process | IEP | Neighborhood |
| MF | GO:0043733 | DNA-3-methylbase glycosylase activity | IEP | Neighborhood |
| BP | GO:0044282 | small molecule catabolic process | IEP | Neighborhood |
| BP | GO:0046164 | alcohol catabolic process | IEP | Neighborhood |
| BP | GO:0046174 | polyol catabolic process | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0046838 | phosphorylated carbohydrate dephosphorylation | IEP | Neighborhood |
| BP | GO:0046855 | inositol phosphate dephosphorylation | IEP | Neighborhood |
| BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
| BP | GO:0071545 | inositol phosphate catabolic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | Neighborhood |
| BP | GO:1901616 | organic hydroxy compound catabolic process | IEP | Neighborhood |
| BP | GO:1903047 | mitotic cell cycle process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003958 | CBFA_NFYB_domain | 41 | 112 |
| No external refs found! |