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  5. Zm00001e036358_P005

Zm00001e036358_P005


Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 OS=Arabidopsis thaliana (sp|q93y16|deah4_arath : 956.0)


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0008312 (LandPlants) Phylogenetic Tree(s): OG_05_0008312_tree ,
OG_06_0009801 (SeedPlants) Phylogenetic Tree(s): OG_06_0009801_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e036358_P005
Cluster HCCA: Cluster_322

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00083520 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
AMTR_s00110p00073830 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.05 Archaeplastida
AT1G26370 No alias RNA helicase family protein 0.03 Archaeplastida
AT1G27900 No alias RNA helicase family protein 0.03 Archaeplastida
AT1G32490 ESP3, EMB2733 RNA helicase family protein 0.04 Archaeplastida
AT2G35340 MEE29 helicase domain-containing protein 0.04 Archaeplastida
AT3G62310 No alias RNA helicase family protein 0.03 Archaeplastida
AT4G01020 No alias helicase domain-containing protein / IBR... 0.03 Archaeplastida
AT4G18465 No alias RNA helicase family protein 0.05 Archaeplastida
AT5G13010 EMB3011 RNA helicase family protein 0.04 Archaeplastida
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Cre07.g349100 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
GSVIVT01003434001 No alias ATP-dependent RNA helicase DEAH11, chloroplastic... 0.03 Archaeplastida
GSVIVT01007911001 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 Archaeplastida
GSVIVT01021163001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
GSVIVT01028153001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
GSVIVT01029863001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
LOC_Os01g11370.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
LOC_Os02g19860.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
LOC_Os08g24760.1 No alias RNA helicase (Prp2) 0.03 Archaeplastida
MA_10435486g0020 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
MA_277016g0010 No alias RNA helicase (Prp2) 0.03 Archaeplastida
MA_34468g0010 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.04 Archaeplastida
MA_5383g0010 No alias RNA helicase (Prp16) 0.04 Archaeplastida
MA_8723931g0010 No alias RNA helicase (Prp16) 0.04 Archaeplastida
Mp1g21130.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
Mp3g17320.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Mp4g02780.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Mp4g16380.1 No alias RNA helicase (Prp2) 0.02 Archaeplastida
Mp7g03460.1 No alias RNA helicase (Prp16) 0.04 Archaeplastida
Pp3c15_1470V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Pp3c1_18490V3.1 No alias RNA helicase family protein 0.04 Archaeplastida
Pp3c1_9270V3.1 No alias ATP-dependent RNA helicase, putative 0.02 Archaeplastida
Pp3c23_5290V3.1 No alias RNA helicase family protein 0.05 Archaeplastida
Pp3c24_1890V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Pp3c24_70V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Pp3c2_27130V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Pp3c9_18320V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Solyc03g115390.4.1 No alias RNA helicase (Prp2) 0.03 Archaeplastida
Solyc10g076910.2.1 No alias RNA helicase (Prp16) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006906 vesicle fusion IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016050 vesicle organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
BP GO:0030259 lipid glycosylation IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0061025 membrane fusion IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090174 organelle membrane fusion IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011709 DUF1605 603 684
IPR003593 AAA+_ATPase 69 177
IPR001650 Helicase_C 255 382
IPR007502 Helicase-assoc_dom 447 519
No external refs found!