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  5. AT3G52040

AT3G52040


Description : unknown protein; Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG0007997 (Archaeplastida) Phylogenetic Tree(s): OG0007997_tree ,
OG_05_0008369 (LandPlants) Phylogenetic Tree(s): OG_05_0008369_tree ,
OG_06_0010472 (SeedPlants) Phylogenetic Tree(s): OG_06_0010472_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G52040
Cluster HCCA: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
Gb_17455 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10436142g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c9_17680V3.1 No alias No annotation 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0000785 chromatin IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005666 RNA polymerase III complex IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006626 protein targeting to mitochondrion IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009304 tRNA transcription IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
CC GO:0022626 cytosolic ribosome IEP Neighborhood
MF GO:0030527 structural constituent of chromatin IEP Neighborhood
BP GO:0030865 cortical cytoskeleton organization IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0031122 cytoplasmic microtubule organization IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043622 cortical microtubule organization IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
BP GO:0098781 ncRNA transcription IEP Neighborhood
CC GO:0098799 outer mitochondrial membrane protein complex IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR019034 UPF0390 1 79
No external refs found!