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  5. Mp2g13680.1

Mp2g13680.1


Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana (sp|q38953|deah5_arath : 1533.0)


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0004210 (LandPlants) Phylogenetic Tree(s): OG_05_0004210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp2g13680.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00073830 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
AT1G32490 ESP3, EMB2733 RNA helicase family protein 0.06 Archaeplastida
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.09 Archaeplastida
AT4G01020 No alias helicase domain-containing protein / IBR... 0.05 Archaeplastida
AT5G10370 No alias helicase domain-containing protein / IBR... 0.03 Archaeplastida
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Cpa|evm.model.tig00000984.27 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.06 Archaeplastida
Cpa|evm.model.tig00020531.53 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 Archaeplastida
Cre07.g349100 No alias RNA processing.RNA splicing.spliceosome... 0.05 Archaeplastida
Cre08.g358563 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
Cre24.g755347 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
GSVIVT01003434001 No alias ATP-dependent RNA helicase DEAH11, chloroplastic... 0.03 Archaeplastida
GSVIVT01007911001 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 Archaeplastida
GSVIVT01029863001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.07 Archaeplastida
Gb_11931 No alias RNA helicase (Prp22) 0.02 Archaeplastida
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Gb_30670 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
Gb_34264 No alias E3 ubiquitin ligase (RBR-Helicase) 0.03 Archaeplastida
LOC_Os01g11370.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
LOC_Os02g19860.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
LOC_Os06g23530.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
LOC_Os08g24760.1 No alias RNA helicase (Prp2) 0.02 Archaeplastida
MA_10435486g0010 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
MA_10435486g0020 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
MA_10436572g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c15_1470V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Pp3c1_18490V3.1 No alias RNA helicase family protein 0.04 Archaeplastida
Pp3c1_9270V3.1 No alias ATP-dependent RNA helicase, putative 0.04 Archaeplastida
Pp3c23_12820V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Pp3c23_5290V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Pp3c2_27130V3.1 No alias RNA helicase family protein 0.04 Archaeplastida
Smo76120 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Smo82212 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
Solyc01g079250.3.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Archaeplastida
Solyc01g110990.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc07g039550.4.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Solyc10g076910.2.1 No alias RNA helicase (Prp16) 0.03 Archaeplastida
Zm00001e001487_P003 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.05 Archaeplastida
Zm00001e010450_P001 No alias RNA helicase (Prp16) 0.03 Archaeplastida
Zm00001e014112_P001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.07 Archaeplastida
Zm00001e022095_P001 No alias RNA helicase (Prp2) 0.03 Archaeplastida
Zm00001e038305_P001 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011709 DUF1605 1166 1241
IPR003029 S1_domain 328 386
IPR007502 Helicase-assoc_dom 1020 1108
IPR001650 Helicase_C 828 958
No external refs found!