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  5. AT3G61830

AT3G61830 (ARF18)


Aliases : ARF18

Description : auxin response factor 18


Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000395 (LandPlants) Phylogenetic Tree(s): OG_05_0000395_tree ,
OG_06_0003855 (SeedPlants) Phylogenetic Tree(s): OG_06_0003855_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G61830
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00168950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
AMTR_s00057p00141830 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.06 Archaeplastida
GSVIVT01015035001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
Pp3c14_16990V3.1 No alias auxin response factor 6 0.02 Archaeplastida
Solyc07g042260.4.1 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e006640_P002 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e013639_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e018126_P002 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e028396_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e039552_P004 No alias transcription factor (ARF) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000059 obsolete protein import into nucleus, docking IEP Neighborhood
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000076 DNA replication checkpoint IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0002252 immune effector process IEP Neighborhood
BP GO:0002376 immune system process IEP Neighborhood
BP GO:0003002 regionalization IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0003872 6-phosphofructokinase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004396 hexokinase activity IEP Neighborhood
MF GO:0004743 pyruvate kinase activity IEP Neighborhood
MF GO:0004835 tubulin-tyrosine ligase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005945 6-phosphofructokinase complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006346 methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006379 mRNA cleavage IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007050 cell cycle arrest IEP Neighborhood
BP GO:0007166 cell surface receptor signaling pathway IEP Neighborhood
BP GO:0007167 enzyme linked receptor protein signaling pathway IEP Neighborhood
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP Neighborhood
BP GO:0007267 cell-cell signaling IEP Neighborhood
BP GO:0007346 regulation of mitotic cell cycle IEP Neighborhood
BP GO:0007389 pattern specification process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008327 methyl-CpG binding IEP Neighborhood
MF GO:0008443 phosphofructokinase activity IEP Neighborhood
BP GO:0009566 fertilization IEP Neighborhood
BP GO:0009567 double fertilization forming a zygote and endosperm IEP Neighborhood
BP GO:0009615 response to virus IEP Neighborhood
BP GO:0009616 virus induced gene silencing IEP Neighborhood
BP GO:0009799 specification of symmetry IEP Neighborhood
BP GO:0009855 determination of bilateral symmetry IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP Neighborhood
BP GO:0009954 proximal/distal pattern formation IEP Neighborhood
BP GO:0010051 xylem and phloem pattern formation IEP Neighborhood
BP GO:0010093 specification of floral organ identity IEP Neighborhood
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP Neighborhood
BP GO:0010305 leaf vascular tissue pattern formation IEP Neighborhood
MF GO:0010314 phosphatidylinositol-5-phosphate binding IEP Neighborhood
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP Neighborhood
BP GO:0010424 DNA methylation on cytosine within a CG sequence IEP Neighborhood
MF GO:0010428 methyl-CpNpG binding IEP Neighborhood
MF GO:0010429 methyl-CpNpN binding IEP Neighborhood
CC GO:0010445 nuclear dicing body IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
BP GO:0010589 leaf proximal/distal pattern formation IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Neighborhood
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019200 carbohydrate kinase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0023052 signaling IEP Neighborhood
BP GO:0030422 production of siRNA involved in RNA interference IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031048 chromatin silencing by small RNA IEP Neighborhood
BP GO:0031050 dsRNA fragmentation IEP Neighborhood
BP GO:0031054 pre-miRNA processing IEP Neighborhood
CC GO:0031306 intrinsic component of mitochondrial outer membrane IEP Neighborhood
CC GO:0031307 integral component of mitochondrial outer membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031570 DNA integrity checkpoint IEP Neighborhood
BP GO:0031935 regulation of chromatin silencing IEP Neighborhood
BP GO:0031937 positive regulation of chromatin silencing IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0032592 integral component of mitochondrial membrane IEP Neighborhood
BP GO:0032776 DNA methylation on cytosine IEP Neighborhood
BP GO:0032880 regulation of protein localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP Neighborhood
MF GO:0035198 miRNA binding IEP Neighborhood
BP GO:0035279 mRNA cleavage involved in gene silencing by miRNA IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0035821 modification of morphology or physiology of other organism IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043900 regulation of multi-organism process IEP Neighborhood
BP GO:0044003 modification by symbiont of host morphology or physiology IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044419 interspecies interaction between organisms IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
BP GO:0045596 negative regulation of cell differentiation IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046937 phytochelatin metabolic process IEP Neighborhood
BP GO:0046938 phytochelatin biosynthetic process IEP Neighborhood
BP GO:0048449 floral organ formation IEP Neighborhood
BP GO:0048451 petal formation IEP Neighborhood
BP GO:0048453 sepal formation IEP Neighborhood
BP GO:0048468 cell development IEP Neighborhood
BP GO:0048481 plant ovule development IEP Neighborhood
BP GO:0048497 maintenance of floral organ identity IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051054 positive regulation of DNA metabolic process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
BP GO:0051567 histone H3-K9 methylation IEP Neighborhood
BP GO:0051568 histone H3-K4 methylation IEP Neighborhood
BP GO:0051607 defense response to virus IEP Neighborhood
BP GO:0051701 interaction with host IEP Neighborhood
BP GO:0051817 modification of morphology or physiology of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052018 modulation by symbiont of RNA levels in host IEP Neighborhood
BP GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0060341 regulation of cellular localization IEP Neighborhood
BP GO:0060968 regulation of gene silencing IEP Neighborhood
BP GO:0061647 histone H3-K9 modification IEP Neighborhood
MF GO:0061980 regulatory RNA binding IEP Neighborhood
BP GO:0065001 specification of axis polarity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0080147 root hair cell development IEP Neighborhood
BP GO:0080154 regulation of fertilization IEP Neighborhood
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP Neighborhood
BP GO:0080188 RNA-directed DNA methylation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090308 regulation of methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0090309 positive regulation of methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090700 maintenance of plant organ identity IEP Neighborhood
BP GO:0090701 specification of plant organ identity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098573 intrinsic component of mitochondrial membrane IEP Neighborhood
BP GO:0098586 cellular response to virus IEP Neighborhood
BP GO:0098795 mRNA cleavage involved in gene silencing IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:1901981 phosphatidylinositol phosphate binding IEP Neighborhood
BP GO:1901987 regulation of cell cycle phase transition IEP Neighborhood
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Neighborhood
BP GO:1902275 regulation of chromatin organization IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1903827 regulation of cellular protein localization IEP Neighborhood
BP GO:1905269 positive regulation of chromatin organization IEP Neighborhood
BP GO:1905393 plant organ formation IEP Neighborhood
BP GO:2000008 regulation of protein localization to cell surface IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000241 regulation of reproductive process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
BP GO:2001252 positive regulation of chromosome organization IEP Neighborhood
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 128 228
IPR033389 AUX/IAA_dom 481 574
IPR010525 Auxin_resp 254 333
No external refs found!