Mp3g10960.1

Description : subunit SSL2/XPB of multifunctional TFIIh complex. component SSL2/XPB of TFIIh basal transcription factor complex

Gene families : OG0004927 (Archaeplastida) Phylogenetic Tree(s): OG0004927_tree ,
OG_05_0005344 (LandPlants) Phylogenetic Tree(s): OG_05_0005344_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp3g10960.1
Cluster	HCCA: Cluster_150

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000949.17	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.01	Archaeplastida
LOC_Os01g49680.1	No alias	subunit SSL2/XPB of multifunctional TFIIh complex....	0.02	Archaeplastida
Pp3c6_13890V3.1	No alias	homolog of Xeroderma pigmentosum complementation group B 2	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Neighborhood
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Neighborhood
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
BP	GO:0002097	tRNA wobble base modification	IEP	Neighborhood
BP	GO:0002098	tRNA wobble uridine modification	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0003747	translation release factor activity	IEP	Neighborhood
MF	GO:0004363	glutathione synthase activity	IEP	Neighborhood
CC	GO:0005666	RNA polymerase III complex	IEP	Neighborhood
CC	GO:0005777	peroxisome	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006383	transcription by RNA polymerase III	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006415	translational termination	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006749	glutathione metabolic process	IEP	Neighborhood
BP	GO:0006750	glutathione biosynthetic process	IEP	Neighborhood
BP	GO:0006766	vitamin metabolic process	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006771	riboflavin metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0007031	peroxisome organization	IEP	Neighborhood
MF	GO:0008079	translation termination factor activity	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
BP	GO:0008150	biological_process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008703	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009110	vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0009231	riboflavin biosynthetic process	IEP	Neighborhood
BP	GO:0009235	cobalamin metabolic process	IEP	Neighborhood
BP	GO:0009236	cobalamin biosynthetic process	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
MF	GO:0009982	pseudouridine synthase activity	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
MF	GO:0016852	sirohydrochlorin cobaltochelatase activity	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0016866	intramolecular transferase activity	IEP	Neighborhood
MF	GO:0016881	acid-amino acid ligase activity	IEP	Neighborhood
BP	GO:0017144	drug metabolic process	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0019184	nonribosomal peptide biosynthetic process	IEP	Neighborhood
MF	GO:0019208	phosphatase regulator activity	IEP	Neighborhood
MF	GO:0019211	phosphatase activator activity	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0022411	cellular component disassembly	IEP	Neighborhood
CC	GO:0030880	RNA polymerase complex	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
BP	GO:0032984	protein-containing complex disassembly	IEP	Neighborhood
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Neighborhood
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Neighborhood
BP	GO:0034227	tRNA thio-modification	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Neighborhood
CC	GO:0042579	microbody	IEP	Neighborhood
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0043624	cellular protein complex disassembly	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Neighborhood
BP	GO:0044283	small molecule biosynthetic process	IEP	Neighborhood
CC	GO:0044445	cytosolic part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Neighborhood
MF	GO:0050662	coenzyme binding	IEP	Neighborhood
BP	GO:0051186	cofactor metabolic process	IEP	Neighborhood
BP	GO:0051188	cofactor biosynthetic process	IEP	Neighborhood
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Neighborhood
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Neighborhood
CC	GO:0070531	BRCA1-A complex	IEP	Neighborhood
CC	GO:0070552	BRISC complex	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
MF	GO:0071949	FAD binding	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
CC	GO:0090730	Las1 complex	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
CC	GO:1902555	endoribonuclease complex	IEP	Neighborhood
CC	GO:1902911	protein kinase complex	IEP	Neighborhood
CC	GO:1905348	endonuclease complex	IEP	Neighborhood
CC	GO:1905354	exoribonuclease complex	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR032438	ERCC3_RAD25_C	470	718
IPR032830	XPB/Ssl2_N	72	196
IPR006935	Helicase/UvrB_N	288	444

External Links

No external refs found!

Mp3g10960.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation