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Description : cohesin cofactor (PDS5)
Gene families : OG0000410 (Archaeplastida) Phylogenetic Tree(s): OG0000410_tree ,
OG_05_0002118 (LandPlants) Phylogenetic Tree(s): OG_05_0002118_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Mp3g13850.1 | |
| Cluster | HCCA: Cluster_159 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00017p00192140 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.02 | Archaeplastida | |
| AMTR_s00061p00213120 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.02 | Archaeplastida | |
| AMTR_s00065p00174980 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.03 | Archaeplastida | |
| AT4G31880 | No alias | LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant... | 0.03 | Archaeplastida | |
| GSVIVT01002824001 | No alias | No description available | 0.02 | Archaeplastida | |
| GSVIVT01008876001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.03 | Archaeplastida | |
| Gb_23673 | No alias | cohesin cofactor (PDS5) | 0.02 | Archaeplastida | |
| LOC_Os04g25960.1 | No alias | cohesin cofactor (PDS5) | 0.01 | Archaeplastida | |
| LOC_Os06g17840.1 | No alias | cohesin cofactor (PDS5) | 0.02 | Archaeplastida | |
| MA_10426058g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| MA_10434055g0010 | No alias | cohesin cofactor (PDS5) | 0.02 | Archaeplastida | |
| MA_10434304g0010 | No alias | cohesin cofactor (PDS5) | 0.02 | Archaeplastida | |
| MA_10434588g0020 | No alias | cohesin cofactor (PDS5) | 0.02 | Archaeplastida | |
| MA_180523g0010 | No alias | cohesin cofactor (PDS5) | 0.02 | Archaeplastida | |
| MA_25261g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| MA_523g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| Pp3c10_24900V3.1 | No alias | binding | 0.03 | Archaeplastida | |
| Pp3c20_23000V3.1 | No alias | binding | 0.04 | Archaeplastida | |
| Pp3c23_10270V3.1 | No alias | binding | 0.02 | Archaeplastida | |
| Solyc03g117010.4.1 | No alias | cohesin cofactor (PDS5) | 0.04 | Archaeplastida | |
| Solyc06g065710.3.1 | No alias | cohesin cofactor (PDS5) | 0.04 | Archaeplastida | |
| Solyc11g012770.2.1 | No alias | cohesin cofactor (PDS5) | 0.04 | Archaeplastida | |
| Zm00001e007658_P001 | No alias | cohesin cofactor (PDS5) | 0.02 | Archaeplastida | |
| Zm00001e015094_P002 | No alias | cohesin cofactor (PDS5) | 0.05 | Archaeplastida | |
| Zm00001e019139_P001 | No alias | cohesin cofactor (PDS5) | 0.02 | Archaeplastida | |
| Zm00001e019144_P001 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| Zm00001e022962_P003 | No alias | cohesin cofactor (PDS5) | 0.06 | Archaeplastida | |
| Zm00001e030989_P001 | No alias | cohesin cofactor (PDS5) | 0.04 | Archaeplastida | |
| Zm00001e036853_P003 | No alias | cohesin cofactor (PDS5) | 0.03 | Archaeplastida | |
| Zm00001e041168_P001 | No alias | cohesin cofactor (PDS5) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000030 | mannosyltransferase activity | IEP | Neighborhood |
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
| MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Neighborhood |
| MF | GO:0004376 | glycolipid mannosyltransferase activity | IEP | Neighborhood |
| MF | GO:0005319 | lipid transporter activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005548 | phospholipid transporter activity | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
| BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
| BP | GO:0006338 | chromatin remodeling | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006487 | protein N-linked glycosylation | IEP | Neighborhood |
| BP | GO:0006497 | protein lipidation | IEP | Neighborhood |
| BP | GO:0006505 | GPI anchor metabolic process | IEP | Neighborhood |
| BP | GO:0006506 | GPI anchor biosynthetic process | IEP | Neighborhood |
| BP | GO:0006661 | phosphatidylinositol biosynthetic process | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0006869 | lipid transport | IEP | Neighborhood |
| MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Neighborhood |
| MF | GO:0008194 | UDP-glycosyltransferase activity | IEP | Neighborhood |
| MF | GO:0008375 | acetylglucosaminyltransferase activity | IEP | Neighborhood |
| BP | GO:0008610 | lipid biosynthetic process | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| MF | GO:0015018 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity | IEP | Neighborhood |
| MF | GO:0015020 | glucuronosyltransferase activity | IEP | Neighborhood |
| BP | GO:0015748 | organophosphate ester transport | IEP | Neighborhood |
| BP | GO:0015914 | phospholipid transport | IEP | Neighborhood |
| BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016757 | transferase activity, transferring glycosyl groups | IEP | Neighborhood |
| MF | GO:0016758 | transferase activity, transferring hexosyl groups | IEP | Neighborhood |
| MF | GO:0016790 | thiolester hydrolase activity | IEP | Neighborhood |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Neighborhood |
| MF | GO:0030144 | alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity | IEP | Neighborhood |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Neighborhood |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Neighborhood |
| MF | GO:0031491 | nucleosome binding | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034728 | nucleosome organization | IEP | Neighborhood |
| MF | GO:0042393 | histone binding | IEP | Neighborhood |
| BP | GO:0043044 | ATP-dependent chromatin remodeling | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043486 | histone exchange | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
| BP | GO:0044255 | cellular lipid metabolic process | IEP | Neighborhood |
| MF | GO:0044877 | protein-containing complex binding | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| MF | GO:0051751 | alpha-1,4-mannosyltransferase activity | IEP | Neighborhood |
| MF | GO:0061505 | DNA topoisomerase II activity | IEP | Neighborhood |
| BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
| BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
| MF | GO:0140103 | catalytic activity, acting on a glycoprotein | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |