Mp4g00040.1

Description : chromatin remodeling factor (Chd3/Mi-2)

Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0008177 (LandPlants) Phylogenetic Tree(s): OG_05_0008177_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp4g00040.1
Cluster	HCCA: Cluster_174

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00216420	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.03	Archaeplastida
AMTR_s00025p00245560	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
AMTR_s00053p00098350	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.02	Archaeplastida
AMTR_s00086p00165640	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
AMTR_s00148p00090060	evm_27.TU.AmTr_v1...	Helicase protein MOM1 OS=Arabidopsis thaliana	0.03	Archaeplastida
AT1G08060	MOM1, MOM	ATP-dependent helicase family protein	0.05	Archaeplastida
AT2G13370	CHR5	chromatin remodeling 5	0.05	Archaeplastida
AT2G28290	SYD, CHR3	P-loop containing nucleoside triphosphate hydrolases...	0.1	Archaeplastida
AT2G46020	CHA2, CHR2, BRM, ATBRM	transcription regulatory protein SNF2, putative	0.09	Archaeplastida
AT3G06010	ATCHR12	Homeotic gene regulator	0.06	Archaeplastida
AT3G06400	CHR11	chromatin-remodeling protein 11	0.03	Archaeplastida
AT5G44800	PKR1, CHR4	chromatin remodeling 4	0.08	Archaeplastida
Cpa\|evm.model.tig00000217.25	No alias	Chromatin structure-remodeling complex protein SYD...	0.02	Archaeplastida
Cpa\|evm.model.tig00000350.9	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.02	Archaeplastida
Cpa\|evm.model.tig00000802.67	No alias	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana	0.03	Archaeplastida
Cpa\|evm.model.tig00000983.26	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.02	Archaeplastida
Cpa\|evm.model.tig00020848.66	No alias	Probable helicase CHR10 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cpa\|evm.model.tig00020960.24	No alias	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cpa\|evm.model.tig00021623.13	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.01	Archaeplastida
Cre03.g179300	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.02	Archaeplastida
Cre07.g325700	No alias	ATP-dependent helicase BRM OS=Arabidopsis thaliana	0.02	Archaeplastida
Cre12.g508150	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
Cre12.g537671	No alias	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana	0.01	Archaeplastida
GSVIVT01012117001	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.08	Archaeplastida
GSVIVT01017791001	No alias	Chromatin organisation.chromatin remodeling...	0.04	Archaeplastida
GSVIVT01017820001	No alias	Chromatin organisation.chromatin remodeling...	0.06	Archaeplastida
GSVIVT01017821001	No alias	No description available	0.08	Archaeplastida
GSVIVT01025216001	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01026952001	No alias	Chromatin organisation.chromatin remodeling...	0.05	Archaeplastida
GSVIVT01035901001	No alias	Chromatin organisation.chromatin remodeling...	0.03	Archaeplastida
GSVIVT01037235001	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.06	Archaeplastida
Gb_01673	No alias	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Gb_05671	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.02	Archaeplastida
Gb_15026	No alias	chromatin remodeling factor (Alc)	0.02	Archaeplastida
Gb_16961	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.06	Archaeplastida
Gb_18673	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.02	Archaeplastida
Gb_27153	No alias	chromatin remodeling factor (Snf2)	0.04	Archaeplastida
LOC_Os05g05780.1	No alias	chromatin remodeling factor (Iswi)	0.04	Archaeplastida
LOC_Os06g01320.1	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.05	Archaeplastida
LOC_Os06g08480.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.03	Archaeplastida
LOC_Os07g46590.1	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.03	Archaeplastida
MA_10427682g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_10429361g0010	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.05	Archaeplastida
MA_10436824g0010	No alias	No annotation	0.06	Archaeplastida
MA_137856g0010	No alias	chromatin remodeling factor (Snf2)	0.06	Archaeplastida
MA_141135g0010	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.02	Archaeplastida
MA_23378g0020	No alias	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis...	0.02	Archaeplastida
MA_637555g0010	No alias	ATP-dependent helicase BRM OS=Arabidopsis thaliana...	0.07	Archaeplastida
MA_8926002g0010	No alias	Chromatin structure-remodeling complex protein SYD...	0.04	Archaeplastida
MA_9572741g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
Pp3c10_2280V3.1	No alias	chromatin remodeling 4	0.05	Archaeplastida
Pp3c11_18940V3.1	No alias	chromatin-remodeling protein 11	0.03	Archaeplastida
Pp3c13_14440V3.1	No alias	transcription regulatory protein SNF2, putative	0.05	Archaeplastida
Pp3c13_19680V3.1	No alias	chromatin remodeling 4	0.08	Archaeplastida
Pp3c14_90V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.09	Archaeplastida
Pp3c21_10800V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.08	Archaeplastida
Pp3c27_3890V3.1	No alias	Homeotic gene regulator	0.05	Archaeplastida
Pp3c3_15820V3.1	No alias	transcription regulatory protein SNF2, putative	0.07	Archaeplastida
Pp3c5_19940V3.1	No alias	chromatin remodeling 5	0.08	Archaeplastida
Pp3c6_10390V3.1	No alias	chromatin remodeling 5	0.07	Archaeplastida
Smo155996	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
Smo440203	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
Smo440558	No alias	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana	0.06	Archaeplastida
Smo440815	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.02	Archaeplastida
Solyc01g094800.4.1	No alias	chromatin remodeling factor (Snf2)	0.02	Archaeplastida
Solyc02g062780.4.1	No alias	chromatin remodeling factor (DDM1)	0.02	Archaeplastida
Solyc02g068560.3.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.04	Archaeplastida
Solyc06g010240.3.1	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Solyc06g054560.3.1	No alias	chromatin remodeling factor (Iswi)	0.04	Archaeplastida
Solyc06g065730.3.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.02	Archaeplastida
Solyc11g062010.3.1	No alias	chromatin remodeling factor (Snf2)	0.07	Archaeplastida
Zm00001e010722_P005	No alias	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e013442_P001	No alias	chromatin remodeling factor (Snf2)	0.06	Archaeplastida
Zm00001e026331_P001	No alias	chromatin remodeling factor (Iswi)	0.03	Archaeplastida
Zm00001e030969_P003	No alias	chromatin remodeling factor (Snf2)	0.05	Archaeplastida
Zm00001e036737_P001	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Zm00001e040406_P002	No alias	chromatin remodeling factor (Snf2)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0016409	palmitoyltransferase activity	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
MF	GO:0044877	protein-containing complex binding	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR023780	Chromo_domain	950	999
IPR019787	Znf_PHD-finger	497	539
IPR019787	Znf_PHD-finger	304	347
IPR000330	SNF2_N	1063	1339
IPR001650	Helicase_C	1363	1476
IPR009463	DUF1087	1658	1699
IPR000313	PWWP_dom	54	145

External Links

No external refs found!

Mp4g00040.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation