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  5. Mp4g12490.1

Mp4g12490.1


Description : transcription factor (MADS/AGL)


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g12490.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00198970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01015641001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01015649001 No alias No description available 0.05 Archaeplastida
GSVIVT01018446001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01021534001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01036551001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Gb_31417 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os02g36924.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os06g22760.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_113509g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Smo79393 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Zm00001e013738_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0003333 amino acid transmembrane transport IEP Neighborhood
MF GO:0004359 glutaminase activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
CC GO:0005666 RNA polymerase III complex IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006383 transcription by RNA polymerase III IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006865 amino acid transport IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042816 vitamin B6 metabolic process IEP Neighborhood
BP GO:0042819 vitamin B6 biosynthetic process IEP Neighborhood
BP GO:0042822 pyridoxal phosphate metabolic process IEP Neighborhood
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Neighborhood
BP GO:0046184 aldehyde biosynthetic process IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0098656 anion transmembrane transport IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
BP GO:1903825 organic acid transmembrane transport IEP Neighborhood
BP GO:1905039 carboxylic acid transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!