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Description : C2H2 and C2HC zinc fingers superfamily protein
Gene families : OG0006423 (Archaeplastida) Phylogenetic Tree(s): OG0006423_tree ,
OG_05_0006641 (LandPlants) Phylogenetic Tree(s): OG_05_0006641_tree ,
OG_06_0007654 (SeedPlants) Phylogenetic Tree(s): OG_06_0007654_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT4G03120 | |
| Cluster | HCCA: Cluster_233 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| LOC_Os02g16640.1 | No alias | component U1C of U1 small nuclear ribonucleoprotein... | 0.02 | Archaeplastida | |
| Solyc06g008860.3.1 | No alias | component U1C of U1 small nuclear ribonucleoprotein... | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005634 | nucleus | ISM | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
| CC | GO:0000502 | proteasome complex | IEP | Neighborhood |
| BP | GO:0001558 | regulation of cell growth | IEP | Neighborhood |
| MF | GO:0003684 | damaged DNA binding | IEP | Neighborhood |
| CC | GO:0005829 | cytosol | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
| BP | GO:0006289 | nucleotide-excision repair | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| CC | GO:0008541 | proteasome regulatory particle, lid subcomplex | IEP | Neighborhood |
| BP | GO:0009266 | response to temperature stimulus | IEP | Neighborhood |
| BP | GO:0009965 | leaf morphogenesis | IEP | Neighborhood |
| BP | GO:0022603 | regulation of anatomical structure morphogenesis | IEP | Neighborhood |
| BP | GO:0022604 | regulation of cell morphogenesis | IEP | Neighborhood |
| MF | GO:0032182 | ubiquitin-like protein binding | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0035966 | response to topologically incorrect protein | IEP | Neighborhood |
| BP | GO:0042023 | DNA endoreduplication | IEP | Neighborhood |
| MF | GO:0043130 | ubiquitin binding | IEP | Neighborhood |
| BP | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | IEP | Neighborhood |
| BP | GO:0043248 | proteasome assembly | IEP | Neighborhood |
| BP | GO:0044786 | cell cycle DNA replication | IEP | Neighborhood |
| MF | GO:0044877 | protein-containing complex binding | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0051510 | regulation of unidimensional cell growth | IEP | Neighborhood |
| BP | GO:0051788 | response to misfolded protein | IEP | Neighborhood |
| MF | GO:0070628 | proteasome binding | IEP | Neighborhood |
| BP | GO:0080129 | proteasome core complex assembly | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| CC | GO:1905368 | peptidase complex | IEP | Neighborhood |
| CC | GO:1905369 | endopeptidase complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013085 | U1-CZ_Znf_C2H2 | 1 | 38 |
| No external refs found! |