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  5. Mp5g07450.1

Mp5g07450.1


Description : component Sm-E of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG0003300 (Archaeplastida) Phylogenetic Tree(s): OG0003300_tree ,
OG_05_0003792 (LandPlants) Phylogenetic Tree(s): OG_05_0003792_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g07450.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT2G18740 No alias Small nuclear ribonucleoprotein family protein 0.08 Archaeplastida
AT4G30330 No alias Small nuclear ribonucleoprotein family protein 0.04 Archaeplastida
Cpa|evm.model.tig00020563.151 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
Cre08.g385200 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 Archaeplastida
GSVIVT01008301001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
LOC_Os02g03440.1 No alias component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.06 Archaeplastida
LOC_Os08g05530.1 No alias component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.07 Archaeplastida
MA_118124g0010 No alias component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
MA_7209g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c14_15210V3.1 No alias Small nuclear ribonucleoprotein family protein 0.06 Archaeplastida
Pp3c17_6070V3.1 No alias Small nuclear ribonucleoprotein family protein 0.03 Archaeplastida
Pp3c2_10270V3.1 No alias Small nuclear ribonucleoprotein family protein 0.05 Archaeplastida
Solyc03g098470.3.1 No alias component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.04 Archaeplastida
Zm00001e016468_P001 No alias No annotation 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Neighborhood
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Neighborhood
BP GO:0015689 molybdate ion transport IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 20 83
No external refs found!