Aliases : SFR6
Description : sensitive to freezing 6
Gene families : OG0006185 (Archaeplastida) Phylogenetic Tree(s): OG0006185_tree ,
OG_05_0006191 (LandPlants) Phylogenetic Tree(s): OG_05_0006191_tree ,
OG_06_0008910 (SeedPlants) Phylogenetic Tree(s): OG_06_0008910_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT4G04920 | |
Cluster | HCCA: Cluster_1 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
GSVIVT01002029001 | No alias | RNA biosynthesis.RNA polymerase II-dependent... | 0.05 | Archaeplastida | |
GSVIVT01002224001 | No alias | RNA biosynthesis.RNA polymerase II-dependent... | 0.08 | Archaeplastida | |
GSVIVT01004519001 | No alias | Mediator of RNA polymerase II transcription subunit 16... | 0.04 | Archaeplastida | |
LOC_Os10g35560.1 | No alias | component MED16 of tail module of MEDIATOR transcription... | 0.05 | Archaeplastida | |
MA_10435759g0010 | No alias | component MED16 of tail module of MEDIATOR transcription... | 0.02 | Archaeplastida | |
Solyc02g078520.4.1 | No alias | component MED16 of tail module of MEDIATOR transcription... | 0.07 | Archaeplastida | |
Zm00001e004466_P003 | No alias | component MED16 of tail module of MEDIATOR transcription... | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | ND | Interproscan |
CC | GO:0005634 | nucleus | IDA | Interproscan |
CC | GO:0005634 | nucleus | ISM | Interproscan |
BP | GO:0006355 | regulation of transcription, DNA-templated | IMP | Interproscan |
BP | GO:0006970 | response to osmotic stress | IMP | Interproscan |
BP | GO:0007155 | cell adhesion | RCA | Interproscan |
BP | GO:0009631 | cold acclimation | IMP | Interproscan |
BP | GO:0010090 | trichome morphogenesis | RCA | Interproscan |
BP | GO:0010104 | regulation of ethylene-activated signaling pathway | IMP | Interproscan |
BP | GO:0010228 | vegetative to reproductive phase transition of meristem | RCA | Interproscan |
BP | GO:0016926 | protein desumoylation | RCA | Interproscan |
BP | GO:0032922 | circadian regulation of gene expression | IMP | Interproscan |
BP | GO:0045010 | actin nucleation | RCA | Interproscan |
BP | GO:0048586 | regulation of long-day photoperiodism, flowering | IMP | Interproscan |
BP | GO:0048765 | root hair cell differentiation | RCA | Interproscan |
BP | GO:0050665 | hydrogen peroxide biosynthetic process | RCA | Interproscan |
BP | GO:0071555 | cell wall organization | RCA | Interproscan |
BP | GO:1901672 | positive regulation of systemic acquired resistance | IMP | Interproscan |
BP | GO:2000022 | regulation of jasmonic acid mediated signaling pathway | IMP | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000003 | reproduction | IEP | Neighborhood |
CC | GO:0000148 | 1,3-beta-D-glucan synthase complex | IEP | Neighborhood |
BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Neighborhood |
BP | GO:0000212 | meiotic spindle organization | IEP | Neighborhood |
MF | GO:0000285 | 1-phosphatidylinositol-3-phosphate 5-kinase activity | IEP | Neighborhood |
BP | GO:0000291 | nuclear-transcribed mRNA catabolic process, exonucleolytic | IEP | Neighborhood |
BP | GO:0000723 | telomere maintenance | IEP | Neighborhood |
CC | GO:0000790 | nuclear chromatin | IEP | Neighborhood |
CC | GO:0000791 | euchromatin | IEP | Neighborhood |
CC | GO:0000932 | P-body | IEP | Neighborhood |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Neighborhood |
MF | GO:0003712 | transcription coregulator activity | IEP | Neighborhood |
MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | Neighborhood |
MF | GO:0004484 | mRNA guanylyltransferase activity | IEP | Neighborhood |
MF | GO:0004532 | exoribonuclease activity | IEP | Neighborhood |
MF | GO:0004534 | 5'-3' exoribonuclease activity | IEP | Neighborhood |
MF | GO:0004630 | phospholipase D activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
CC | GO:0005719 | nuclear euchromatin | IEP | Neighborhood |
CC | GO:0005876 | spindle microtubule | IEP | Neighborhood |
BP | GO:0005976 | polysaccharide metabolic process | IEP | Neighborhood |
BP | GO:0006074 | (1->3)-beta-D-glucan metabolic process | IEP | Neighborhood |
BP | GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006310 | DNA recombination | IEP | Neighborhood |
BP | GO:0006370 | 7-methylguanosine mRNA capping | IEP | Neighborhood |
BP | GO:0006401 | RNA catabolic process | IEP | Neighborhood |
BP | GO:0006402 | mRNA catabolic process | IEP | Neighborhood |
BP | GO:0006482 | protein demethylation | IEP | Neighborhood |
BP | GO:0006486 | protein glycosylation | IEP | Neighborhood |
BP | GO:0006487 | protein N-linked glycosylation | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
BP | GO:0006996 | organelle organization | IEP | Neighborhood |
BP | GO:0007010 | cytoskeleton organization | IEP | Neighborhood |
BP | GO:0007059 | chromosome segregation | IEP | Neighborhood |
BP | GO:0007062 | sister chromatid cohesion | IEP | Neighborhood |
BP | GO:0007129 | synapsis | IEP | Neighborhood |
BP | GO:0007131 | reciprocal meiotic recombination | IEP | Neighborhood |
BP | GO:0007346 | regulation of mitotic cell cycle | IEP | Neighborhood |
CC | GO:0008023 | transcription elongation factor complex | IEP | Neighborhood |
MF | GO:0008158 | hedgehog receptor activity | IEP | Neighborhood |
MF | GO:0008192 | RNA guanylyltransferase activity | IEP | Neighborhood |
BP | GO:0008214 | protein dealkylation | IEP | Neighborhood |
BP | GO:0008284 | positive regulation of cell proliferation | IEP | Neighborhood |
MF | GO:0008409 | 5'-3' exonuclease activity | IEP | Neighborhood |
MF | GO:0008536 | Ran GTPase binding | IEP | Neighborhood |
BP | GO:0009056 | catabolic process | IEP | Neighborhood |
BP | GO:0009057 | macromolecule catabolic process | IEP | Neighborhood |
BP | GO:0009452 | 7-methylguanosine RNA capping | IEP | Neighborhood |
BP | GO:0009606 | tropism | IEP | Neighborhood |
BP | GO:0009615 | response to virus | IEP | Neighborhood |
BP | GO:0009629 | response to gravity | IEP | Neighborhood |
BP | GO:0009630 | gravitropism | IEP | Neighborhood |
BP | GO:0009826 | unidimensional cell growth | IEP | Neighborhood |
BP | GO:0009887 | animal organ morphogenesis | IEP | Neighborhood |
BP | GO:0009892 | negative regulation of metabolic process | IEP | Neighborhood |
BP | GO:0009961 | response to 1-aminocyclopropane-1-carboxylic acid | IEP | Neighborhood |
BP | GO:0010014 | meristem initiation | IEP | Neighborhood |
BP | GO:0010212 | response to ionizing radiation | IEP | Neighborhood |
BP | GO:0010235 | guard mother cell cytokinesis | IEP | Neighborhood |
BP | GO:0010332 | response to gamma radiation | IEP | Neighborhood |
BP | GO:0010410 | hemicellulose metabolic process | IEP | Neighborhood |
BP | GO:0010413 | glucuronoxylan metabolic process | IEP | Neighborhood |
BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0010586 | miRNA metabolic process | IEP | Neighborhood |
BP | GO:0010587 | miRNA catabolic process | IEP | Neighborhood |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Neighborhood |
BP | GO:0010628 | positive regulation of gene expression | IEP | Neighborhood |
BP | GO:0010629 | negative regulation of gene expression | IEP | Neighborhood |
BP | GO:0015802 | basic amino acid transport | IEP | Neighborhood |
BP | GO:0016049 | cell growth | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
BP | GO:0016192 | vesicle-mediated transport | IEP | Neighborhood |
MF | GO:0016307 | phosphatidylinositol phosphate kinase activity | IEP | Neighborhood |
BP | GO:0016482 | cytosolic transport | IEP | Neighborhood |
BP | GO:0016577 | histone demethylation | IEP | Neighborhood |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Neighborhood |
MF | GO:0016796 | exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Neighborhood |
MF | GO:0016896 | exoribonuclease activity, producing 5'-phosphomonoesters | IEP | Neighborhood |
BP | GO:0019439 | aromatic compound catabolic process | IEP | Neighborhood |
BP | GO:0022402 | cell cycle process | IEP | Neighborhood |
BP | GO:0030036 | actin cytoskeleton organization | IEP | Neighborhood |
CC | GO:0030119 | AP-type membrane coat adaptor complex | IEP | Neighborhood |
CC | GO:0030121 | AP-1 adaptor complex | IEP | Neighborhood |
CC | GO:0030131 | clathrin adaptor complex | IEP | Neighborhood |
MF | GO:0030276 | clathrin binding | IEP | Neighborhood |
BP | GO:0031087 | deadenylation-independent decapping of nuclear-transcribed mRNA | IEP | Neighborhood |
BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Neighborhood |
BP | GO:0032200 | telomere organization | IEP | Neighborhood |
BP | GO:0032204 | regulation of telomere maintenance | IEP | Neighborhood |
BP | GO:0032504 | multicellular organism reproduction | IEP | Neighborhood |
BP | GO:0033036 | macromolecule localization | IEP | Neighborhood |
BP | GO:0033044 | regulation of chromosome organization | IEP | Neighborhood |
BP | GO:0033169 | histone H3-K9 demethylation | IEP | Neighborhood |
BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Neighborhood |
BP | GO:0034661 | ncRNA catabolic process | IEP | Neighborhood |
CC | GO:0035101 | FACT complex | IEP | Neighborhood |
CC | GO:0035770 | ribonucleoprotein granule | IEP | Neighborhood |
BP | GO:0035825 | homologous recombination | IEP | Neighborhood |
BP | GO:0036260 | RNA capping | IEP | Neighborhood |
CC | GO:0036464 | cytoplasmic ribonucleoprotein granule | IEP | Neighborhood |
BP | GO:0040007 | growth | IEP | Neighborhood |
BP | GO:0042127 | regulation of cell proliferation | IEP | Neighborhood |
BP | GO:0042138 | meiotic DNA double-strand break formation | IEP | Neighborhood |
BP | GO:0042147 | retrograde transport, endosome to Golgi | IEP | Neighborhood |
BP | GO:0043069 | negative regulation of programmed cell death | IEP | Neighborhood |
BP | GO:0043200 | response to amino acid | IEP | Neighborhood |
BP | GO:0043247 | telomere maintenance in response to DNA damage | IEP | Neighborhood |
BP | GO:0043413 | macromolecule glycosylation | IEP | Neighborhood |
BP | GO:0043455 | regulation of secondary metabolic process | IEP | Neighborhood |
BP | GO:0043687 | post-translational protein modification | IEP | Neighborhood |
BP | GO:0044038 | cell wall macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0044248 | cellular catabolic process | IEP | Neighborhood |
BP | GO:0044262 | cellular carbohydrate metabolic process | IEP | Neighborhood |
BP | GO:0044264 | cellular polysaccharide metabolic process | IEP | Neighborhood |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Neighborhood |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Neighborhood |
BP | GO:0045132 | meiotic chromosome segregation | IEP | Neighborhood |
BP | GO:0045491 | xylan metabolic process | IEP | Neighborhood |
BP | GO:0045492 | xylan biosynthetic process | IEP | Neighborhood |
BP | GO:0045595 | regulation of cell differentiation | IEP | Neighborhood |
BP | GO:0045893 | positive regulation of transcription, DNA-templated | IEP | Neighborhood |
BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0046700 | heterocycle catabolic process | IEP | Neighborhood |
BP | GO:0048467 | gynoecium development | IEP | Neighborhood |
BP | GO:0048519 | negative regulation of biological process | IEP | Neighborhood |
BP | GO:0048527 | lateral root development | IEP | Neighborhood |
BP | GO:0048528 | post-embryonic root development | IEP | Neighborhood |
BP | GO:0048577 | negative regulation of short-day photoperiodism, flowering | IEP | Neighborhood |
BP | GO:0048579 | negative regulation of long-day photoperiodism, flowering | IEP | Neighborhood |
BP | GO:0048587 | regulation of short-day photoperiodism, flowering | IEP | Neighborhood |
BP | GO:0048589 | developmental growth | IEP | Neighborhood |
MF | GO:0051011 | microtubule minus-end binding | IEP | Neighborhood |
BP | GO:0051052 | regulation of DNA metabolic process | IEP | Neighborhood |
BP | GO:0051254 | positive regulation of RNA metabolic process | IEP | Neighborhood |
BP | GO:0051273 | beta-glucan metabolic process | IEP | Neighborhood |
MF | GO:0060090 | molecular adaptor activity | IEP | Neighborhood |
BP | GO:0060249 | anatomical structure homeostasis | IEP | Neighborhood |
BP | GO:0060548 | negative regulation of cell death | IEP | Neighborhood |
BP | GO:0061982 | meiosis I cell cycle process | IEP | Neighborhood |
BP | GO:0070076 | histone lysine demethylation | IEP | Neighborhood |
BP | GO:0070085 | glycosylation | IEP | Neighborhood |
BP | GO:0070192 | chromosome organization involved in meiotic cell cycle | IEP | Neighborhood |
MF | GO:0070568 | guanylyltransferase activity | IEP | Neighborhood |
BP | GO:0070589 | cellular component macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0070592 | cell wall polysaccharide biosynthetic process | IEP | Neighborhood |
BP | GO:0070988 | demethylation | IEP | Neighborhood |
BP | GO:0080119 | ER body organization | IEP | Neighborhood |
BP | GO:0090213 | regulation of radial pattern formation | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
BP | GO:0090305 | nucleic acid phosphodiester bond hydrolysis | IEP | Neighborhood |
BP | GO:0090306 | spindle assembly involved in meiosis | IEP | Neighborhood |
BP | GO:0090696 | post-embryonic plant organ development | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
BP | GO:0098813 | nuclear chromosome segregation | IEP | Neighborhood |
BP | GO:0099402 | plant organ development | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
BP | GO:1901575 | organic substance catabolic process | IEP | Neighborhood |
BP | GO:1902680 | positive regulation of RNA biosynthetic process | IEP | Neighborhood |
BP | GO:1903046 | meiotic cell cycle process | IEP | Neighborhood |
BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | IEP | Neighborhood |
BP | GO:2000762 | regulation of phenylpropanoid metabolic process | IEP | Neighborhood |
No InterPro domains available for this sequence
No external refs found! |