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  5. AT4G05060

AT4G05060


Description : PapD-like superfamily protein


Gene families : OG0002114 (Archaeplastida) Phylogenetic Tree(s): OG0002114_tree ,
OG_05_0002170 (LandPlants) Phylogenetic Tree(s): OG_05_0002170_tree ,
OG_06_0040959 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G05060
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Mp3g16880.1 No alias Vesicle-associated protein 4-1 OS=Arabidopsis thaliana... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity ISS Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP Neighborhood
CC GO:0000419 RNA polymerase V complex IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Neighborhood
MF GO:0003872 6-phosphofructokinase activity IEP Neighborhood
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Neighborhood
MF GO:0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity IEP Neighborhood
MF GO:0004595 pantetheine-phosphate adenylyltransferase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005771 multivesicular body IEP Neighborhood
CC GO:0005945 6-phosphofructokinase complex IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006041 glucosamine metabolic process IEP Neighborhood
BP GO:0006042 glucosamine biosynthetic process IEP Neighborhood
BP GO:0006140 regulation of nucleotide metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006625 protein targeting to peroxisome IEP Neighborhood
BP GO:0006635 fatty acid beta-oxidation IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0007031 peroxisome organization IEP Neighborhood
BP GO:0007032 endosome organization IEP Neighborhood
CC GO:0008076 voltage-gated potassium channel complex IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008443 phosphofructokinase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009062 fatty acid catabolic process IEP Neighborhood
BP GO:0009648 photoperiodism IEP Neighborhood
BP GO:0009896 positive regulation of catabolic process IEP Neighborhood
BP GO:0010098 suspensor development IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0015919 peroxisomal membrane transport IEP Neighborhood
BP GO:0015936 coenzyme A metabolic process IEP Neighborhood
BP GO:0015937 coenzyme A biosynthetic process IEP Neighborhood
BP GO:0015939 pantothenate metabolic process IEP Neighborhood
BP GO:0015940 pantothenate biosynthetic process IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
BP GO:0016050 vesicle organization IEP Neighborhood
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP Neighborhood
BP GO:0016558 protein import into peroxisome matrix IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0019395 fatty acid oxidation IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
BP GO:0030808 regulation of nucleotide biosynthetic process IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034440 lipid oxidation IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
CC GO:0034702 ion channel complex IEP Neighborhood
CC GO:0034703 cation channel complex IEP Neighborhood
CC GO:0034705 potassium channel complex IEP Neighborhood
BP GO:0042176 regulation of protein catabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043574 peroxisomal transport IEP Neighborhood
BP GO:0044242 cellular lipid catabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Neighborhood
BP GO:0045036 protein targeting to chloroplast IEP Neighborhood
BP GO:0045037 protein import into chloroplast stroma IEP Neighborhood
BP GO:0045732 positive regulation of protein catabolic process IEP Neighborhood
BP GO:0046349 amino sugar biosynthetic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048573 photoperiodism, flowering IEP Neighborhood
BP GO:0051196 regulation of coenzyme metabolic process IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0065002 intracellular protein transmembrane transport IEP Neighborhood
MF GO:0070548 L-glutamine aminotransferase activity IEP Neighborhood
MF GO:0070696 transmembrane receptor protein serine/threonine kinase binding IEP Neighborhood
BP GO:0071806 protein transmembrane transport IEP Neighborhood
BP GO:0072329 monocarboxylic acid catabolic process IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072596 establishment of protein localization to chloroplast IEP Neighborhood
BP GO:0072598 protein localization to chloroplast IEP Neighborhood
BP GO:0072662 protein localization to peroxisome IEP Neighborhood
BP GO:0072663 establishment of protein localization to peroxisome IEP Neighborhood
BP GO:0080020 regulation of coenzyme A biosynthetic process IEP Neighborhood
MF GO:0080054 low-affinity nitrate transmembrane transporter activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
BP GO:1900371 regulation of purine nucleotide biosynthetic process IEP Neighborhood
BP GO:1900542 regulation of purine nucleotide metabolic process IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901073 glucosamine-containing compound biosynthetic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
CC GO:1902495 transmembrane transporter complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990351 transporter complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000535 MSP_dom 100 210
No external refs found!