AT4G09990

Description : Protein of unknown function (DUF579)

Gene families : OG0000727 (Archaeplastida) Phylogenetic Tree(s): OG0000727_tree ,
OG_05_0000525 (LandPlants) Phylogenetic Tree(s): OG_05_0000525_tree ,
OG_06_0001137 (SeedPlants) Phylogenetic Tree(s): OG_06_0001137_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G09990
Cluster	HCCA: Cluster_250

Target	Alias	Description	ECC score	Gene Family Method
AT1G09610	No alias	Protein of unknown function (DUF579)	0.05	Archaeplastida
AT3G50220	No alias	Protein of unknown function (DUF579)	0.04	Archaeplastida
AT5G67210	No alias	Protein of unknown function (DUF579)	0.05	Archaeplastida
LOC_Os02g06380.1	No alias	Protein IRX15-LIKE OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os04g55640.1	No alias	Protein IRX15-LIKE OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os11g13870.1	No alias	Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis...	0.02	Archaeplastida
MA_195978g0010	No alias	Probable methyltransferase At1g27930 OS=Arabidopsis...	0.02	Archaeplastida
Smo57632	No alias	Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana	0.03	Archaeplastida
Solyc01g103360.4.1	No alias	glucuronoxylan 4-O-methyltransferase	0.04	Archaeplastida
Solyc02g064945.1.1	No alias	Protein IRX15-LIKE OS=Arabidopsis thaliana...	0.04	Archaeplastida
Solyc03g110890.1.1	No alias	Probable methyltransferase At1g27930 OS=Arabidopsis...	0.07	Archaeplastida
Solyc05g015497.1.1	No alias	Probable methyltransferase At1g27930 OS=Arabidopsis...	0.05	Archaeplastida
Solyc11g031950.1.1	No alias	glucuronoxylan 4-O-methyltransferase	0.07	Archaeplastida
Zm00001e011047_P001	No alias	Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e013688_P001	No alias	Protein IRX15-LIKE OS=Arabidopsis thaliana...	0.04	Archaeplastida
Zm00001e039770_P002	No alias	glucuronoxylan 4-O-methyltransferase	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010053	root epidermal cell differentiation	None	Extended
BP	GO:0010054	trichoblast differentiation	RCA	Interproscan
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
MF	GO:0030775	glucuronoxylan 4-O-methyltransferase activity	IDA	Interproscan
BP	GO:0032502	developmental process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045491	xylan metabolic process	IMP	Interproscan
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005199	structural constituent of cell wall	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0006749	glutathione metabolic process	IEP	Neighborhood
BP	GO:0006826	iron ion transport	IEP	Neighborhood
CC	GO:0009504	cell plate	IEP	Neighborhood
CC	GO:0009505	plant-type cell wall	IEP	Neighborhood
CC	GO:0009531	secondary cell wall	IEP	Neighborhood
BP	GO:0009664	plant-type cell wall organization	IEP	Neighborhood
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Neighborhood
BP	GO:0009806	lignan metabolic process	IEP	Neighborhood
BP	GO:0009807	lignan biosynthetic process	IEP	Neighborhood
BP	GO:0009808	lignin metabolic process	IEP	Neighborhood
BP	GO:0009826	unidimensional cell growth	IEP	Neighborhood
BP	GO:0009827	plant-type cell wall modification	IEP	Neighborhood
BP	GO:0009828	plant-type cell wall loosening	IEP	Neighborhood
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	IEP	Neighborhood
MF	GO:0009927	histidine phosphotransfer kinase activity	IEP	Neighborhood
BP	GO:0010106	cellular response to iron ion starvation	IEP	Neighborhood
BP	GO:0010167	response to nitrate	IEP	Neighborhood
BP	GO:0010413	glucuronoxylan metabolic process	IEP	Neighborhood
BP	GO:0015706	nitrate transport	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0017048	Rho GTPase binding	IEP	Neighborhood
BP	GO:0019748	secondary metabolic process	IEP	Neighborhood
BP	GO:0021700	developmental maturation	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
BP	GO:0032989	cellular component morphogenesis	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	Neighborhood
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0045492	xylan biosynthetic process	IEP	Neighborhood
MF	GO:0046409	p-coumarate 3-hydroxylase activity	IEP	Neighborhood
BP	GO:0048364	root development	IEP	Neighborhood
BP	GO:0048446	petal morphogenesis	IEP	Neighborhood
BP	GO:0048469	cell maturation	IEP	Neighborhood
BP	GO:0048527	lateral root development	IEP	Neighborhood
BP	GO:0048528	post-embryonic root development	IEP	Neighborhood
BP	GO:0048588	developmental cell growth	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0048764	trichoblast maturation	IEP	Neighborhood
BP	GO:0048765	root hair cell differentiation	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Neighborhood
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071695	anatomical structure maturation	IEP	Neighborhood
BP	GO:0090696	post-embryonic plant organ development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR021148	Polysacc_synth_dom	85	268

External Links

No external refs found!

AT4G09990

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation